Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0583 ATGAAGAGGTCAAGGGATGATGCTTACATGAGTTCACAACACAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGGGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTAGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTTTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACCGGTGTCATAGCAAGAGTGAAGGAGCTTTTTAAAGGTCACAAAGATCTAATTTTGGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCACCCCAAAAGAAGCCTGTTGAATTTGCTGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTATGAGGAGGTTGCTACACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACTCATTTTCTTCCTGATACTTCTGGAGCAGCCTCTAATCTCTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAAAGGAACATTGCTTCACAAGGTGATCGTGACTTCAGTGCTGACCATCCTGATCCAGAACTTGACAGATGTTTGGTTAAGGCTGATAAGGATCAGAGGAGGCGTGATGAGAAGGAAAAAGAAAGTAGAGAAGAGAAAGACAGGAGACAACGGGAAAGGGATGATAGAGATTATGATCATGATGCTAGTAGGGAGAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTATGGTGCTGAACCATTGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCTTGTGAGGATAAAAGTTCTTTGAAAAGTATGTACAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACGAAATCCTGAGGATTACCAGGAATTTTTGAAGTGCTTAAACATCTACTGCAAGGAAATAATTGCTCGTCATGAATTGCAATCATTGGTGAGCAATTTGCTGGGAAAATATGCAGACCTTATGGAGGGATTTGATGAATTTTTGTCTCAATGTGAGAAGAATGAAGGATTCCTTGCCGGTCTTCTGAAAAAAAAATCCTTTTGGCATGAAGGACATGGACCAAAACCAATGAAGGTAGAGGACAAGGATCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTGAATGCCGAGAAAGGGAGAAATCCAATGCAACTGCTAACAAGGATGTTTCAGCTCCTAAGATGTCTCTATATGCGAGCAAAGATAAGTATGCAGGAAAACCTATAAGTGAGCTGGATCTTTCTAACTGTGAACAATGCACTCCCAGTTATCGTCTTCTTCCCAAAAATTACATAATACCACCAGCCAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATCACTGGGTTTCTGTTACTTCTGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGCTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAGGAGCTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTAACAGCCCTAAATCTTAGGTGCATTGAAAGATTATATGGTGATCATGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATTTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAACAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGTAGTTTTTACTTTAAGCAGCAGGATACAAAGAGCTTGAGTACTAAAGTCTTACTGGTAGAAATCAAAGAAATTAGTGAGAAGAAACGAAAAGAAGATGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACCTGGAATTTGTGTATCCTGATCCAGACATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCTTCTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATAGAAATAATTCTACCAAAAGTGGCACTGAAATTGTTGCTGGTGATGGTAGTCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAATGGGGACGAAAACTTTCCATTTGAACAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATAATAAGGTTAAAGAGGATAATAATCTTGATTTGGACCGCTTTGCACATAAGACTGAAGCCTTAGGGAGTAATACACAGCAGGGTAAAATGAGTATAAATGCATCTATACCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATCCAATTGAACGGTTGGTGAATGCTAATGTCTCACTATCCTCGGCGGTGGAGCAAAATAATAGAAGAACAAATGTGGATAACGCAACAGGACTTGCTACCACTCCATTAAGACCTGGTAATATATCTTCTGTGGGAGGAGTTGGTTTACCTTCATTAGAGGGTGCTGATTCTACACGACCAGTTACATCCACTAATGGGGCCGTCATTGAGGACTCTAAAGTTCACAGATATCGGGAAGAATCAGTGGGACACTTCAGAAGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACCTTGATGAGGATACCTCTGCAGATTATGGACATTCTGGTTCGGAGGCAGTTCATAGAGGAAAAGATGGTAACATTTACCGACTATACCAAAACAGACATGGGGATGTAGTTCGTGCTGTAGCAGGAGGAGAAAATGAGGCTGATGATGAAGGAGAAGAAAGTCCCCGTAGATCATTGGAGGACAGCGAAAATGCTTCAGAAAATGGTGATGTTTCTGGTACAGAGTCTGGTGATGGTGAGGAGTGTTCTCGAGAGCATGAGGACGGGGATCATGATCATGATAACAAGGCAGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAACGATGTTGAAGGAGATGGTGCCTCATTGCCATATTCAGAGCGCTTTCTTGTCAATGTAAAGCCTCTGGCAAAATATGTTCCTCCGACATTGCATGAGAAAGAAAGGACTGGTCGAGTCTTTTATGGAAATGACTCCTTTTATTTGCTGTTTAGACTCCATCAGACATTGTATGAGAGGATACGGTCTGCAAAGGTTAACTCATCGTCTGCGGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAGTGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGATTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGACGAGGTGGATAACAAGCTGCTTCAGCTGTATACATATGAAAAGTCAAGAAAACCTGGACGATTTGTTGATTTAGTTTGTCATGAAAATGCCCGTGTTCTTCTTCATGATGAAAACATATATCGTATTGAATGTTCAGCTGCACCTACCCAATTGTCTATTCAACTGATGGATTATGGATTTGATAAACCTGAAGTGACTACTGTGTCAATGGACCCTAATTTTTCAGCCTATCTGCACAATGACTTCCTATCTGTTGTCCGTGACAAAAAGGAGAAGTCAGGAGTTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTAGTGAAGAATTTTCAAGCCAGACCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCATACGTTTTAGATACTGAAGACCTTTTATATCAAGCAAGAAAAAAAAGGAGGACTTTGCATCAGAGCAATTCATGCCTTGAACAATCAAAGTCCTCGATAATTTCTTCAAGCAGAGAACAACGGGTCTGCAAATTATTTTCAAATTGA 4242 0.4033 MKRSRDDAYMSSQHKRPMVSSRGEPSGQPQMMGGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVATLFQDHADLLEEFTHFLPDTSGAASNLYASTRNPLLRDRSSAMPTVRQMHVEKRERNIASQGDRDFSADHPDPELDRCLVKADKDQRRRDEKEKESREEKDRRQRERDDRDYDHDASRENLSHKRKSACRAEDYGAEPLHDTDENFGMHPVSYACEDKSSLKSMYSPVIGYLDKVKEKLRNPEDYQEFLKCLNIYCKEIIARHELQSLVSNLLGKYADLMEGFDEFLSQCEKNEGFLAGLLKKKSFWHEGHGPKPMKVEDKDRDRDDGMKERDRECREREKSNATANKDVSAPKMSLYASKDKYAGKPISELDLSNCEQCTPSYRLLPKNYIIPPASQRTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNAFLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLVEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPDIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDRNNSTKSGTEIVAGDGSPVMNPKNLNINRNGDENFPFEQSHSCKQWQPSGHNKVKEDNNLDLDRFAHKTEALGSNTQQGKMSINASIPDEVSRANKQDHPIERLVNANVSLSSAVEQNNRRTNVDNATGLATTPLRPGNISSVGGVGLPSLEGADSTRPVTSTNGAVIEDSKVHRYREESVGHFRSEREEGELSPNGDLDEDTSADYGHSGSEAVHRGKDGNIYRLYQNRHGDVVRAVAGGENEADDEGEESPRRSLEDSENASENGDVSGTESGDGEECSREHEDGDHDHDNKAESEGEAEGMADANDVEGDGASLPYSERFLVNVKPLAKYVPPTLHEKERTGRVFYGNDSFYLLFRLHQTLYERIRSAKVNSSSAERKWRASNDTDSTDQYGRFLSALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEVDNKLLQLYTYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSAAPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSVVRDKKEKSGVYLKRNKRKNGSSEEFSSQTMDGLQIVNGLECKIACNSSKVSYVLDTEDLLYQARKKRRTLHQSNSCLEQSKSSIISSSREQRVCKLFSN* 1414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 425 465 - -
Pvu3g0583 1413 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Pvu3g0583 1413 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Pvu3g0583 1413 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Pvu3g0583 1413 Pfam Sin3 family co-repressor 491 582 IPR013194 -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 765 801 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 14 37 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 1020 1042 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 1 38 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 931 999 - -
Pvu3g0583 1413 PANTHER SIN3B-RELATED 1 1390 IPR039774 GO:0003714
Pvu3g0583 1413 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Pvu3g0583 1413 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 208 302 - -
Pvu3g0583 1413 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Pvu3g0583 1413 SMART hdac_interact2seq4b 489 589 IPR013194 -
Pvu3g0583 1413 Pfam C-terminal domain of Sin3a protein 1128 1374 IPR031693 -
Pvu3g0583 1413 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 425 458 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 1020 1094 - -
Pvu3g0583 1413 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Pvu3g0583 1413 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Pvu3g0583 1413 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 950 973 - -
Pvu3g0583 1413 Coils Coil 558 578 - -
Pvu3g0583 1413 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1390 - -
Pvu3g0583 1413 Coils Coil 255 282 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 221 302 - -
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 1055 1081 - -
Pvu3g0583 1413 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Pvu3g0583 1413 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Pvu3g0583 1413 MobiDBLite consensus disorder prediction 982 999 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0583 Pvu-Chr3 7233492 7244696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0583 28 119 WRKY Transcription Factor Family AT4G12020 60.638 8.74e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pvu3g0583 Sin3a_C 2.6e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0583 K11644 - gmx:100781798 2313.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0583 3 7233492 7244696 Pvu3g0583 3 7233492 7244696 ECH
Pvu2g0804 2 11527088 11539238 Pvu3g0583 3 7233492 7244696 PCT