Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0560 ATGACTGTGGATGAAGTCGGGAGTAGCTCCGAGTGGAGCAAAGAACAGGATAAAGCATTTGAAAATGCCTTGGCAATTCATCCTGAAGATGCTTCGGACAGATGGAAGAAGATTGCGGCTGATGTACCAGGGAAAACCTTGGAAGAGATTAAGCACCACTACGAGCTCTTGGTTGAAGATGTTAATCAGATTGAATCTGGTTGCGTACCTTTGCCATCTTATAATTATTCTTCAGAGGGCTCAGCAGGCCATGCTAGTGATGAAGGAGCCGGCAAGAAGGGAGGCAGTTCATGGAATAGTAACAACGAATCAAATCATGGAAATAAGGCTTCAAGATCAGATCAGGAACGACGAAAGGGTATTGCATGGACAGAGGATGAACACAAGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGCATATCAAGGAACTTTGTAGTGACAAGAACACCTACACAAGTTGCAAGCCATGCCCAAAAATACTTCATTCGTTTGAACTCGATGAATAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGTGTCAACAACGGGGAAGTTTCAGCACCTCAAGGACCAATTACTGGCCAAACAAATGGTTCTGCAGCAAACTCTGGAAAATCTACCAAACCAGCCCCTCCCACCCCAACTGCTGCCCCAAGTGTAGGAATATATGCTGCTCCAACCATTGGACAACCTGTAGGAGGACCCCTTGTATCTGCAGTTGGCACCCCAGTGAACCTTCCTACATCGGCACACATGGCATATGGTCTTGGTGGCCCGGTTCCTGTGACAGTTGTTCCTGGAGCCCCAATGAACTTGGGTCCTGTGCCATACCCCATGCCACATACATCTGCTCATAGATGA 885 0.4655 MTVDEVGSSSEWSKEQDKAFENALAIHPEDASDRWKKIAADVPGKTLEEIKHHYELLVEDVNQIESGCVPLPSYNYSSEGSAGHASDEGAGKKGGSSWNSNNESNHGNKASRSDQERRKGIAWTEDEHKLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGEVSAPQGPITGQTNGSAANSGKSTKPAPPTPTAAPSVGIYAAPTIGQPVGGPLVSAVGTPVNLPTSAHMAYGLGGPVPVTVVPGAPMNLGPVPYPMPHTSAHR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0560 294 CDD SANT 11 58 IPR001005 -
Pvu3g0560 294 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Pvu3g0560 294 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Pvu3g0560 294 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Pvu3g0560 294 MobiDBLite consensus disorder prediction 77 119 - -
Pvu3g0560 294 MobiDBLite consensus disorder prediction 93 108 - -
Pvu3g0560 294 Gene3D - 121 173 - -
Pvu3g0560 294 SMART sant 119 169 IPR001005 -
Pvu3g0560 294 SMART sant 8 60 IPR001005 -
Pvu3g0560 294 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Pvu3g0560 294 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Pvu3g0560 294 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 282 - -
Pvu3g0560 294 MobiDBLite consensus disorder prediction 189 226 - -
Pvu3g0560 294 CDD SANT 122 167 IPR001005 -
Pvu3g0560 294 Gene3D - 4 71 - -
Pvu3g0560 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Pvu3g0560 294 PANTHER TRANSCRIPTION FACTOR KUA1 7 282 - -
Pvu3g0560 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Pvu3g0560 294 MobiDBLite consensus disorder prediction 189 218 - -
Pvu3g0560 294 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Pvu3g0560 294 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Pvu3g0560 294 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0560 Pvu-Chr3 6869600 6876771 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0560 Myb_DNA-binding 6.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0560 - - gmx:100820272 510.375