Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0553 ATGAGTTGGGTTCATTCTCAAATCTGCCATAGCAGTGATGCTATCAACAACCCCGCTAGTATTTCCCCATCTTCTTGTTCTTCTTCTGCACCATTGCCTTACAGTTCTGAGTACAAGAAACAACTGGCGCCTCCTCTATCTTCTTCATCTGGCACTAGAATAAGCCCTGCAATTGTTTTCATCTTTGTCATTCTAGCTGTTGTGTTTTTCATCTCTGGTGTCCTTCACTTGCTTGTTAGATTCCTCATAAGGCACATGTCCTCTTCGTCAATTTCCCAGTCCAATAGGTACCCTGACATGTCTGAACCTGATCCTTACCAGAGGCAGTTACAGCAGCTCTTCCATCTCCATGATTTAGGCCTAGATCAGGCCTTCATAGATGCTCTCCCAGTTTTCCTATACAAAGACATAATAGGTTTGAAGGAGCCTTTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCCGAACAAGACATGCTCAGGCTGCTGCCCATTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTATCAAATTCAACTTGTCCTCTCTGCAGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATGACTTTGAGGGTCTGAGGGAGGAACCTGGGGTTTCGGGCAGTGCTGCTGGAGAGGCTGGTTCCTTTAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAAGGGGTGGAAAGAGGAGGAGGAGGAGGAGGAGGAGGGGAGAGCAGTACAAGTAATTTGGATGCTAGGAGATGCTATTCAATGGGGTCCTTCCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGTAGGTACCAGTGGTGGCAGTGTGAGACAATTCAAAGGTAGATTGGACAATTTTGGGAATTCTTCCACTGACTTGGATGTTGAGGGCAAAAAAATCAACATTGCAAGGAAAGGTGAAAGTTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTATCAAGTTCACCACAAAACTATTTGGGTGGTTCTAATGTCACTACTGCAGCTTTGCCATGGATGAATAGAGCTCAAGGTACATGA 1161 0.4496 MSWVHSQICHSSDAINNPASISPSSCSSSAPLPYSSEYKKQLAPPLSSSSGTRISPAIVFIFVILAVVFFISGVLHLLVRFLIRHMSSSSISQSNRYPDMSEPDPYQRQLQQLFHLHDLGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPICNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYDFEGLREEPGVSGSAAGEAGSFNKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGGGGGGGESSTSNLDARRCYSMGSFQYVVADSDLQVALCPNRGDGVGTSGGSVRQFKGRLDNFGNSSTDLDVEGKKINIARKGESFSVSKIWQWSRKDKVSSSPQNYLGGSNVTTAALPWMNRAQGT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0553 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 373 - -
Pvu3g0553 386 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Pvu3g0553 386 Pfam Ring finger domain 145 188 IPR001841 -
Pvu3g0553 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 193 IPR013083 -
Pvu3g0553 386 SMART ring_2 146 187 IPR001841 -
Pvu3g0553 386 CDD RING-H2_PA-TM-RING 145 188 - -
Pvu3g0553 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 373 - -
Pvu3g0553 386 SUPERFAMILY RING/U-box 125 194 - -
Pvu3g0553 386 MobiDBLite consensus disorder prediction 251 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0553 Pvu-Chr3 6738340 6740202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0553 48 358 C3H Transcription Factor Family AT2G18650 37.870 1.03e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0553 - - gmx:100818135 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0553 3 6738340 6740202 Pvu3g0553 3 6738340 6740202 ECH
Pvu2g0753 2 10346117 10347884 Pvu3g0553 3 6738340 6740202 PCT