Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0548 ATGGCTTCAAGATCATATGCTAATCTGCTAGACTTGGCTAGTGGGGACTTGCTTGATATTCCGCGCACTCCAAGAGCTCTTCCAAGGGTTATGACCATTCCTGGAATTATTTCTGACCTGGATGGTTATGGTTGTAATGATGGTGATTCAGATGTTAGCTCTTCTGGATATAGGGAGCGGAAAATCATTGTGGCAAACATGTTGCCGTTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGGTCTTCAGTTGGGATGAAGATTCAATTTTATTACAGTTAAAAGATGGTTTTTCTTCTGATACTGAAGTAATCTATGTGGGTTCTCTCAAGATTGAAATAGATCTCTGTGAGCAGGATGCAGTTGCTCAGAGATTACTGGATGAATTTAATTGTGTACCTACCTTTCTTCCCCATGATCTCCAGAAGAAGTTCTACCTTGGCTTTTGTAAGCAGCAACTTTGGCCTCTCTTTCATTATATGTTACCCATATGTCCAGATCATGGTGATCGCTTTGACCGTACACTTTGGCAGGCCTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTCATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTAATGGTTTTGCCTACTTTCTTGAGGAAGCGATATAATCAGGTTAAACTTGGATTCTTTCTGCATAGTCCTTTCCCTTCATCTGAAATCTACCGAACTTTACCAGTAAGGGATGAAATTTTGAGGGGATTGTTGAACTCTGATTTAATTGGCTTTCATACATTTGATTATGCTCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTTGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCGCACTATTTTTATTAAAATTTCACCTGTAGGCATTCACATGGGTAGACTTGAATCTGTATTAAATCTTTCTTCTACATCTGCTAAACTGAAAGAGGTTCAGGAAGAGTTTAAGGGTAAGAAAGTAATTCTTGGTGTTGATGACATGGATATTTTTAAGGGTATTAGTCTGAAACTTCTAGCCGTGGAACATCTGCTGCAGCAGAATTCAGATTTGCGGGGCAAAGTTGTCCTAGTTCAAATTGTAAATCCTGCAAGGGGCTTTGGGAAGGATGTTCAAGAAGCAAAGAATGAAACATATTTAATTGCCAGGAGGATCAATGATACATATAGCAAAAATAATTATCAGCCAGTTATTCTCATTGACCGACCTGTTCCTCGCTTTGAGAAGAGTGCATATTATGCCGTAGCAGAATGTTGCATTGTGAATGCTGTAAGGGATGGTATGAACTTAGTTCCATACAAATATATAGTCTGCAGACAGGGAACTGCACGACTAGATGAATCATTGGGTAGAAAAAGTGATTCTCCTCGGACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTTAGCGGAGCAATAAGGGTCAATCCCTGGGACATAGATGCCGTAGCCGATGCTATGTATGCTGCCCTTACTATGAGTGATTCAGAGAAGCAGTTGCGCCACGAGAAGCACTATAGGTATGTCAGTTCTCATGATGTGGCATATTGGGCAAATAGCTTTATGCAGGATTTGGAGAGAGCGTGCGCAGATCATTACACCAAAAGATGCTGGGGATTTGGTTTGGGCTTGGGGTTCAGAGTTGTTTCTCTTTCTCATGGTTTTAGGAAGTTGACGATTGACCATGTTGTTTCAGCATACAAGAGAACCAATAGAAGGGCCATCTTTCTTGATTATGATGGTACTGTTGTACCACAATCTTCCATCAGTAAAGTCCCCAGCCCTGAAGTCATCTCCGTCTTAAATGCTCTTTGTAATGATCCCAAGAATATTGTGTTCATTGTTAGTGGGAGGGGAAGGGATTCACTGAGTGACTGGTTTACTTCATGCCGAAAGCTGGGACTTGCAGCAGAACATGGGTACTTTTTACGGTGGAACAAAGATTCAGAATGGGAAGCAAGTCACTTGTCTGCAGATCTGGATTGGAAAAAGATAGTGGAACCTGTCATGCAGTTGTATACAGAAGCAACTGATGGTTCTAATATTGAAATTAAGGAAAGTGGTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAGGAATTGTTGAATCACTTGGAAAGTGTGCTTGCTAATGAACCAGCAGTTGTTACGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAATAAGCAAGGGTTGGGTAGCCGAAGAGGTTCTTCAGACCATGGTTAACAGTAATCCACCAGACTTTGTACTGTGCATAGGTGATGATAGGTCTGATGAGGACATGTTTGAGACCATTTTGAGGACGGTATCATTGCCATCAGCTCCAGAGATCTTTGCCTGCACTGTAGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTTGATGATACTAGTGATGTAGTAAAGTTGCTTCAAGGCCTTGCTGCTTCATCCAATCCAAAACCCAGGCATCTTGCTCACTTTCAGGTCTCCTTTGAGAGCACAGTTTGA 2574 0.4153 MASRSYANLLDLASGDLLDIPRTPRALPRVMTIPGIISDLDGYGCNDGDSDVSSSGYRERKIIVANMLPLQAKRDIETAKWVFSWDEDSILLQLKDGFSSDTEVIYVGSLKIEIDLCEQDAVAQRLLDEFNCVPTFLPHDLQKKFYLGFCKQQLWPLFHYMLPICPDHGDRFDRTLWQAYVSANKIFADKVMEVINPDDDFVWVHDYHLMVLPTFLRKRYNQVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKISPVGIHMGRLESVLNLSSTSAKLKEVQEEFKGKKVILGVDDMDIFKGISLKLLAVEHLLQQNSDLRGKVVLVQIVNPARGFGKDVQEAKNETYLIARRINDTYSKNNYQPVILIDRPVPRFEKSAYYAVAECCIVNAVRDGMNLVPYKYIVCRQGTARLDESLGRKSDSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADAMYAALTMSDSEKQLRHEKHYRYVSSHDVAYWANSFMQDLERACADHYTKRCWGFGLGLGFRVVSLSHGFRKLTIDHVVSAYKRTNRRAIFLDYDGTVVPQSSISKVPSPEVISVLNALCNDPKNIVFIVSGRGRDSLSDWFTSCRKLGLAAEHGYFLRWNKDSEWEASHLSADLDWKKIVEPVMQLYTEATDGSNIEIKESGLVWHHQDADPDFGSCQAKELLNHLESVLANEPAVVTRGQHIVEVKPQGISKGWVAEEVLQTMVNSNPPDFVLCIGDDRSDEDMFETILRTVSLPSAPEIFACTVGRKPSKAKYFLDDTSDVVKLLQGLAASSNPKPRHLAHFQVSFESTV* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0548 857 CDD GT20_TPS 60 545 IPR001830 GO:0003824|GO:0005992
Pvu3g0548 857 Gene3D - 721 849 IPR023214 -
Pvu3g0548 857 Gene3D - 591 708 IPR023214 -
Pvu3g0548 857 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 593 793 IPR006379 -
Pvu3g0548 857 Pfam Trehalose-phosphatase 595 826 IPR003337 GO:0003824|GO:0005992
Pvu3g0548 857 Gene3D Glycogen Phosphorylase B; 54 312 - -
Pvu3g0548 857 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 548 - -
Pvu3g0548 857 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 848 IPR001830 GO:0003824|GO:0005992
Pvu3g0548 857 SUPERFAMILY HAD-like 592 836 IPR036412 -
Pvu3g0548 857 CDD HAD_TPP 593 830 - -
Pvu3g0548 857 Gene3D Glycogen Phosphorylase B; 313 529 - -
Pvu3g0548 857 Pfam Glycosyltransferase family 20 60 545 IPR001830 GO:0003824|GO:0005992
Pvu3g0548 857 TIGRFAM T6PP: trehalose-phosphatase 590 835 IPR003337 GO:0003824|GO:0005992
Pvu3g0548 857 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0548 Pvu-Chr3 6639942 6644949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0548 1 857 Trehalose Biosynthesis Gene Families AT1G60140 73.751 0.0 1358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0548 K16055 - gmx:100775779 1644.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0548 3 6639942 6644949 Pvu9g1863 9 26482201 26488228 ECH
Pvu3g0548 3 6639942 6644949 Pvu3g0548 3 6639942 6644949 ECH
Pvu2g0750 2 10261952 10266982 Pvu3g0548 3 6639942 6644949 PCT