Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0538 ATGCACAACAACATGATAAATACTCTCTTTCTCCTCCTCCTCCTTCTCTCACTACTCACTGTTGCTTTCGGTGGTCGCAACATACAAGATAAAAACCCGTTTACTCCAAAGGCTTCTGTGGCACGCTACTGGGACAACCATGTCCGCAACACCTTGCCAAAGCCCTCATTCCTACTTTCCAAGGCCTCCCCAATGACCGCCGCTGACACCGCCACTTTTGCAAAGCTTGCCGCCGCCAACACCCTCTCTACGCGCTTGCCGGAGTTCTGCTCCGCCGCTCACCTTCTCTGCTTCCCGGAGGTGCGTCCAAGCCTGGAGAAACACACCCAAGACGAGAATTTTCAAACCTACAACGACGGCCAGAACTTCACCAACTACGGAACGGCTAGAGGAGGCGGAATCGACACCTTCAAGAACTACTCCAACGACCTCCTCAGCATTCCTGTCAACGATTTCCGTCGATACAGCCGCGGAGCCGCCGGCCACGAAGAAACCTTCACCGGCTATGCCAGCGGCACCAACGTCGCCGACCAGAGCTTCCACACGTACGGCACCAACAGCGCCGGAGGCTCCGGTGAGTTCAAAAACTACTCCAGCGATTCAAACGTCCCCGACCTGCGGTTTTCCACCTACTCCGACTCCACCGCTGGGAGGACACAGTCGTTCTCCCGCTACAGCGAGGACGGAAACTCAGGCGGGCAGACATTTCAGAGCTATGGAAAGAATTCCGCCGGTGCTGAGAACGAGTTTACTGGCTACGGAACAAACTCCAACGTTGCCTCCTCTGGTTTCACGAACTACGGATCGAAAGGCACGGGTCCCAACGACACGTTCGCGAACTATGGCGTGGATATGAACGTCCCTGAAATAACCTTCAAGAGTTATGCAGACGGAACGCATGGTGGCACTGAGACTTTTGCCAACTACAGGGACCAGTCCAACGTTGGTGACGACACCTTCCAATCCTATGCTAAGAACACCAAAGAAGGGACCCAAGTGGATTTCAAAAACTACGGTAACTCCGCCAACCCAGGTACCGACACTTTCAAAGGCTACGCCAAAGGAGCCGAAGGGGATCATAAGGTTGGCTTCACCGGCTACGGCGTCAACACCAACGCTACCTTTAAGGACTACGCCAAAGAGGGTGTTTCCTTCGCTTCTTACAACACCTCTTCTTCAAATCTCGGTGGCAGTTTGGTAAAAAGGTGGGTTGAACCGGGTAAGTTCTTTCGCGAGAGCATGCTGAAGGAAGGAAGCGTGATGGGTATGCCAGATATAAGAGATAAAATGCCACAAAGATCATTTCTTCCCCGCTCCATTCTGATGAAATTGCCCTTCTCTTCTTCAAAGATTGAGGAGCTGAAGAGCGTGTTTAAGGTGTCTGATAACTCGTCCATGGAGAAGATGATGACGGATTCTCTGGGTGAGTGCGAGAGAGCACCGAGCGTGGGAGAGATCAAACGTTGTGTGGGGTCTGTGGAGGATATGATTGATTTTGCAACCTCTGTTTTGGGTCACAATGTTGGAGTTTGGACCACTCAGAACGTAAACGGGTTCAGCAAGAATGTGATGGTGGGTCGGGTCAAAGGAATGAACGGTGGCAAGGTGACCAAATCAGTGTCTTGCCACCAGAGCTTGTTCCCTTATCTCCTCTACTACTGTCACTCCGTTCCTAAGGTTCGGGTCTACGAAGCGGATCTCTTGGATCCCGAATCCAAGGCGAAGATTAACCACGGTGTTGCTATATGTCACTTGGACACCACTGCATGGAGCCCCACCCACGGTGCATTCGTGGCTCTCGGGTCGAGTCCGGGTCGGATCGAAGTATGCCATTGGATCTTCGAGAATGACATGACTTGGACCGTTGCTGACTGA 1875 0.5248 MHNNMINTLFLLLLLLSLLTVAFGGRNIQDKNPFTPKASVARYWDNHVRNTLPKPSFLLSKASPMTAADTATFAKLAAANTLSTRLPEFCSAAHLLCFPEVRPSLEKHTQDENFQTYNDGQNFTNYGTARGGGIDTFKNYSNDLLSIPVNDFRRYSRGAAGHEETFTGYASGTNVADQSFHTYGTNSAGGSGEFKNYSSDSNVPDLRFSTYSDSTAGRTQSFSRYSEDGNSGGQTFQSYGKNSAGAENEFTGYGTNSNVASSGFTNYGSKGTGPNDTFANYGVDMNVPEITFKSYADGTHGGTETFANYRDQSNVGDDTFQSYAKNTKEGTQVDFKNYGNSANPGTDTFKGYAKGAEGDHKVGFTGYGVNTNATFKDYAKEGVSFASYNTSSSNLGGSLVKRWVEPGKFFRESMLKEGSVMGMPDIRDKMPQRSFLPRSILMKLPFSSSKIEELKSVFKVSDNSSMEKMMTDSLGECERAPSVGEIKRCVGSVEDMIDFATSVLGHNVGVWTTQNVNGFSKNVMVGRVKGMNGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDPESKAKINHGVAICHLDTTAWSPTHGAFVALGSSPGRIEVCHWIFENDMTWTVAD* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0538 624 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 8 624 - -
Pvu3g0538 624 Pfam BURP domain 409 621 IPR004873 -
Pvu3g0538 624 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 8 624 - -
Pvu3g0538 624 SMART BURP_2 407 623 IPR004873 -
Pvu3g0538 624 MobiDBLite consensus disorder prediction 210 243 - -
Pvu3g0538 624 ProSiteProfiles BURP domain profile. 409 623 IPR004873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0538 Pvu-Chr3 6447930 6450425 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0538 - - var:108321369 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0538 3 6447930 6450425 Pvu9g1853 9 26356444 26358912 ECH
Pvu3g0538 3 6447930 6450425 Pvu3g0538 3 6447930 6450425 ECH
Pvu2g0741 2 9822329 9825223 Pvu3g0538 3 6447930 6450425 PCT