Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0521 ATGGGGGATCGGGGTTCGGGCGCCGCGAAACCGATTTGGATGAAGCAAGCGGAGGAGGCGAAGCTGAAGAGCGAGGCGGAGAAGGCCGCGGCAGCGAAGGCGGCGTTCGAGGCCACGTTCAAGGGTTTGGAGAAGAATCGCGAGAAGGGTGGGGGCGTTGTTCAATCGGACAGCGAGTCGGAGGAGTACGAGGACCTGGCCAATAAGCCCATTGGGCCCGTCGATCCCTCCAAGTGCACTGCCGCGGGTACCGGGATCGCCGGCGGAACGGCGTGTGCCCCTTCATCGTTTGTTGTGGTCGCTAAGGATGCTGATGAGAGGAAGGTTTCCAACGGGGGCGCGCAAATCAAGGTGAGGGTGACGCCCGGGTTGGGTGTTGGAGGGTCTGAGCAAGAAGGGATGGTGAAGGATATGGGTGATGGAACTTATACTGTGACCTATGTGGTGCCCAAGCGAGGAAATTATATGGTCAGTGTTGAGTGTAATGGGAGGCCTATCATGGGGAGTCCCTTTCCTGTGTTTTTCAGTGCAGCAGGTAATGGTAGTGGAGGGCTGCTGGGTTTAGCTCCTGCATCTACATTTCCAAACCTGGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGGTCAGTTTCAGGGGCATTCCCTGGATTGTTGGGAATGATTCCAGGGGTTGTTGCTGGAGCTTCTGGTGGTGCTATTTTGCCTGGAATTGGGGCCTCACTTGGTGAAGTTTGTCGTGATTACCTTAATGGGCGTTGTGCAAAAGTAGATTGTAAGTTGAATCACCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCGACAACCTCAATGGGAACACTTAGCCAAGCTCCTATGGCACCTTCCGCCGCTGCAATGGCTGCAGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCGCATGCTGCTCAGGTGCAAGCTCAGTCTGCGAAAGATTCTGCTGGTTCTCCTGAAAAGTCTAGTAAAGACGATGCATTGAAGAAAACCCTTCAAGTTAGCAATCTTAGCCCTCTTCTCACTGTGGAACAGCTAAAGCAACTCTTTGCATTCTGTGGCACTGTTGTTGATTGTACCATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAGCCTGAAGAGGCAACTGCTGCTCTGGCATTAAACAACATGGATGTTGGGGGGCGCCCTTTGAATGTTGAAATGGCAAAATCACTTCCACAAAAGCCATCTGTGGTGAATTCTTCACTTGCTTCATCATCTCTTCCTCTGATGATGCAGCAAGCTGTTGCAATGCAACAGATGCAATTCCAGCAAGCATTGAGGATGCAACAAACCATGACTGCTCAGCAGGCTGCTAATCGAGCTGCAACCATGAAATCTGCCACAGAGCTAGCTGCTGCCCGAGCTGCAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGAAAGTGAAGAGAAAGAGACAAAGCAAAAATCCAGATCCCCCTCTCCCCCTCCTGGAAGATCTAGATCAAAGTCCAGATCTCCTATCAATTACCGGAGAAGGAGGAGGTCTCGCTCTTATTCACCTGCTCGTCATTCTAGGGATCATCGGTCACCGTTGAGGTTCCATCATTACTCGAGCTATGAAAGGGAAAGGCGCTTTAGAGATAGTAGGGAACATAGTGATAGATACAGAAAACGAGACTTGGATAGATCACTTGATCATCGTTCATCTGTTTCTAGAAGAAACAAAAGTAGGAGTGTTAGTCCTCATACAAGGAAATCATCTGTTTCTCCAAAACGTCATAGAGAAACTTCACCTCATAGAGGAAGGAAACAGTCACGCGCTGATTCAGGCTCTCCCAGTCGTCGCAGAGGTAGGGCTTCTCCGAACACTGATGAAAAAAAATTAAGAAACAGAAGGCACTCAAGATCAAGATCATCAGATGATAGGCTTCATTCTAGCAAAAATGAGGAAATTTTGCATGGGAAGTCTAAACACAAAGAGAGAAAGCGATCCAGGTCAGGGTCTGTGGATGAAAAGCCTCACAGAAGGAGTCGATCATCCCCAAGAAAAGTGGATGAAAGTAGATCCAGATACAAAAAACGCTCAAGGTCTAAATCTGTGGATGATAAGCATGATTCACCTGAGCGATTGGATCAAAACAGAAATAGAAGAATGAGGCATAGTGATAAAAGGCACTCTAGGTCAAGATCTACAGAAAATAGGGATCTATCTGAAGTCAGGGTGGATGAAAGCAAAAATGAGAAGTCAAAACATCGGGATTCTAAAAGGGGCAGGTCAAAATCTGTTGAAGGGAAGCATCGCTCTAAAGATAAATCTGGTGAAAATAGAGATAAGAAATCAAAACATCGAGATAGAAGGCGTTCAAGGTCAACATCATTAGAAGGTGAGCATGACAAAAGTGGCACTTCACCCCATATTAATTTGGATGAGAGAAATTTTGAAGTGAAACAATCCAGGTCAAAGTTCCCTGAAGGCAAGCATCACTTTAGTGATAAATACGGAAATCGAGATGAAAAATCCGAGCATCAAAAGAAAACCCCACCAAAATCAAAATCAGAACAATTTGATGGTAGTGGTTCCTTCCAAGGAAATTTCAAGGATTATGATTCAAAGGGGAAATCACAATCTGATTCTGGATCTGCAGAAATTAAGCATAATTTGAGTGATGGAGAAAATACTACTTGTGATGAAAACTCAAAACTTTCTGGAGATGCCTTGCTGGAACCAATTATCCTGAAAGATACTGGGATGCTGACTTCAGTGAATGGTAACTACAAGTTAGATGAGTCAAATGAAGCTGATGATAACCCAGGATGGATATGCGTCGAAGAAGTGGGAAATGTAAAATATTAA 2874 0.4582 MGDRGSGAAKPIWMKQAEEAKLKSEAEKAAAAKAAFEATFKGLEKNREKGGGVVQSDSESEEYEDLANKPIGPVDPSKCTAAGTGIAGGTACAPSSFVVVAKDADERKVSNGGAQIKVRVTPGLGVGGSEQEGMVKDMGDGTYTVTYVVPKRGNYMVSVECNGRPIMGSPFPVFFSAAGNGSGGLLGLAPASTFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGVVAGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPEKSSKDDALKKTLQVSNLSPLLTVEQLKQLFAFCGTVVDCTITDSKHFAYIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPQKPSVVNSSLASSSLPLMMQQAVAMQQMQFQQALRMQQTMTAQQAANRAATMKSATELAAARAAEISKKLNPDGLESEEKETKQKSRSPSPPPGRSRSKSRSPINYRRRRRSRSYSPARHSRDHRSPLRFHHYSSYERERRFRDSREHSDRYRKRDLDRSLDHRSSVSRRNKSRSVSPHTRKSSVSPKRHRETSPHRGRKQSRADSGSPSRRRGRASPNTDEKKLRNRRHSRSRSSDDRLHSSKNEEILHGKSKHKERKRSRSGSVDEKPHRRSRSSPRKVDESRSRYKKRSRSKSVDDKHDSPERLDQNRNRRMRHSDKRHSRSRSTENRDLSEVRVDESKNEKSKHRDSKRGRSKSVEGKHRSKDKSGENRDKKSKHRDRRRSRSTSLEGEHDKSGTSPHINLDERNFEVKQSRSKFPEGKHHFSDKYGNRDEKSEHQKKTPPKSKSEQFDGSGSFQGNFKDYDSKGKSQSDSGSAEIKHNLSDGENTTCDENSKLSGDALLEPIILKDTGMLTSVNGNYKLDESNEADDNPGWICVEEVGNVKY* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0521 957 ProSiteProfiles Zinc finger C3H1-type profile. 246 267 IPR000571 GO:0046872
Pvu3g0521 957 MobiDBLite consensus disorder prediction 529 579 - -
Pvu3g0521 957 SMART flmn_3 75 178 IPR001298 GO:0005515
Pvu3g0521 957 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 408 IPR000504 GO:0003723
Pvu3g0521 957 MobiDBLite consensus disorder prediction 670 724 - -
Pvu3g0521 957 Pfam Filamin/ABP280 repeat 73 171 IPR017868 -
Pvu3g0521 957 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 341 401 IPR000504 GO:0003723
Pvu3g0521 957 SUPERFAMILY E set domains 73 173 IPR014756 -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 608 663 - -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 859 903 - -
Pvu3g0521 957 CDD RRM_SF 339 404 - -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 794 858 - -
Pvu3g0521 957 Coils Coil 14 35 - -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 511 528 - -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 479 496 - -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 46 71 - -
Pvu3g0521 957 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 7 697 - -
Pvu3g0521 957 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 672 893 - -
Pvu3g0521 957 ProSiteProfiles Filamin/ABP280 repeat profile. 71 175 IPR017868 -
Pvu3g0521 957 Gene3D - 297 417 IPR012677 -
Pvu3g0521 957 MobiDBLite consensus disorder prediction 732 786 - -
Pvu3g0521 957 SMART rrm1_1 338 404 IPR000504 GO:0003723
Pvu3g0521 957 MobiDBLite consensus disorder prediction 477 903 - -
Pvu3g0521 957 Gene3D Immunoglobulins 73 180 IPR013783 -
Pvu3g0521 957 SUPERFAMILY RNA-binding domain, RBD 325 414 IPR035979 GO:0003676
Pvu3g0521 957 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 672 893 - -
Pvu3g0521 957 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 7 697 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0521 324 407 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 7.88e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0521 - - gmx:100790138 1364.75