Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0498 ATGCCTGGAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGCCCCATCTCGCTGGAACTCATGAGAGACCCAGTCACCGTCTGCACCGGTCAAACCTACGACCGACCCAGCATCGACTCCTGGGTTACCGCCGGTAACATTACCTGCCCCGTCACACGTGCCACTCTCACCGACTTCACCCTTATCCCCAACCACACGCTCCGACGCCTTATCCAGGACTGGTGCGTGGCAAACCGCGCTTTCGGGGTCGAGCGAATCCCCACTCCCAAACAGCCCGCGGACCCGGCCTTGGTTCGCTCCCTTCTCAACCAAACATCCTCCGATTCCGCTCCAACTCACCTTCGCCTCTCCTCTCTCCGACGACTCAGACAACTCGCTCGCGACTCCGACAAGAATCGCTCTCTCATTTCCTCTCACAACGTCCGCCAGATCCTTCTCCCTATCGTTTTCCACGGTGCCAGCGAGTTGAACCACGAGGCGCTCGCGCTACTCGTGTTGTTCCCGCTCGGCGAGTCCGAGTGCGCCGCGCTCGCTTCCGATTCCGAGAAGGTTAATTATCTCTCGCGGTTGCTCTCGCACAACTCGCTCGACGTCCGAGTCAACTCGGCCGCGTTGATTGAGATCGTCGTCGCCGGCACGCACTCGCCGGAGCTTCGCGCATGCGTGAGCGAGGTTGATGAAATCTACGACGGTGTCGTGGACCTGCTCCGCAGCCCGATCTCGTACCCGCGCGCGCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTTTGCTTGGTGAAGCAGACGCGGCACAAGGCGGTGGCCGCCGGCGCGCCGGCGGTGCTCGTCGACAGGCTCGCGGACTTCGAGAAATGCGACGCGGAGAGGGCGCTTGCCACGGTGGAGCTCCTTTGCAGGATTCCCGCGGGATGCGAGGCGTTCGCTGGCCACGCACTGACGGTGCCGATGCTGGTGAAGATAATCCTGAAGATATCGCATCGCGCGACGGAGTACGCGGCCGGAGCGTTGCTGTCGCTGTGCTCCGAATCGGAGCGGTGCCAGCGAGAGGCGGTGACGGCGGGGGTGTTGACTCAGCTTCTGCTTCTGGTGCAGAGCGATTGCACGGAGAGAGCCAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTTTGA 1242 0.6071 MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIDSWVTAGNITCPVTRATLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPALVRSLLNQTSSDSAPTHLRLSSLRRLRQLARDSDKNRSLISSHNVRQILLPIVFHGASELNHEALALLVLFPLGESECAALASDSEKVNYLSRLLSHNSLDVRVNSAALIEIVVAGTHSPELRACVSEVDEIYDGVVDLLRSPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISHRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0498 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Pvu3g0498 413 Gene3D - 92 402 IPR011989 -
Pvu3g0498 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Pvu3g0498 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Pvu3g0498 413 SUPERFAMILY RING/U-box 12 90 - -
Pvu3g0498 413 CDD RING-Ubox_PUB 18 59 IPR045210 -
Pvu3g0498 413 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 409 - -
Pvu3g0498 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Pvu3g0498 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Pvu3g0498 413 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0498 Pvu-Chr3 5743206 5744447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0498 1 413 U-box Gene Family AT1G49780 66.038 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0498 - - var:108341190 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0498 3 5743206 5744447 Pvu3g0498 3 5743206 5744447 ECH