Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0496 ATGGTCTTGATCTCAGAAGACGAAGGTTTGCTTGATATGAACTTCCTGTGGGAAAACCACTGGTGGGATCCCTCCGATTCCGATAACTCGCGTGAAACCAAAGGAAACACGAAGGCAGAAAAGCAGAAGAACGAAAAGGATGAAGGTGTGACGATGAAGAAGAAGAAGAAGCGAAATCATGGGGAGCTGAAGAAGATTACGAGTGCAGAAGGAAAAGGTGAAAAGAGTCGTGAATCGGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAGAAAATGAAAAACATGTTCACTGCTCTTCATGCTTTGCTTCCCCATCTTCCTTCTAAGGCGGATAAATCAACGGTTGTGGATGAAGCAGTGAGCTACATAAAAAGCCTTGAGAGAACCGTGGAAAAGCTGGAGAAACAGAAAGAAGAAAGGCTCCAGTGTGGCTCCACGTTCATGACTGCTCAGGGACTTTCTTCTAATTACAACTTTTCAAACGCGATTGTGGGAACTTCTTCAAACGCGCTTTTGTTCCCTGCGCAAAGGCCAGTGGCTTTTCATAAAACGTGGGCCTCTTCAAACATAGTCTTGAATGTTTTTGGAGACGAGGCCCAATTCGGCATTTGCGCGGCCCATAAGCCAGGCCTCATGTCCAGCGTAGCCTTAGTGCTGGATAAATACAACATAGAGCTTCTATCTGCCCACGTTTCCTGCATTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGGAAACGAGCTTCACATCAGATGCTTCATGCAAATTCAGTGGAAGAAATTTATAGGCTGGCTGCAGGAGAGATTCTGCTATGGATAGCTTAA 837 0.4504 MVLISEDEGLLDMNFLWENHWWDPSDSDNSRETKGNTKAEKQKNEKDEGVTMKKKKKRNHGELKKITSAEGKGEKSRESDHEMHIWTERERRKKMKNMFTALHALLPHLPSKADKSTVVDEAVSYIKSLERTVEKLEKQKEERLQCGSTFMTAQGLSSNYNFSNAIVGTSSNALLFPAQRPVAFHKTWASSNIVLNVFGDEAQFGICAAHKPGLMSSVALVLDKYNIELLSAHVSCIGNGNAIMIQAHGKRASHQMLHANSVEEIYRLAAGEILLWIA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0496 278 MobiDBLite consensus disorder prediction 24 55 - -
Pvu3g0496 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 129 IPR011598 GO:0046983
Pvu3g0496 278 SMART finulus 87 135 IPR011598 GO:0046983
Pvu3g0496 278 Pfam Helix-loop-helix DNA-binding domain 84 130 IPR011598 GO:0046983
Pvu3g0496 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 142 IPR036638 GO:0046983
Pvu3g0496 278 CDD ACT_UUR-ACR-like 206 239 - -
Pvu3g0496 278 PANTHER TRANSCRIPTION FACTOR BHLH95 17 276 - -
Pvu3g0496 278 Coils Coil 119 146 - -
Pvu3g0496 278 CDD bHLH_AtbHLH_like 84 137 IPR045239 -
Pvu3g0496 278 PANTHER - 17 276 IPR044278 GO:0003700|GO:0006355|GO:0009960
Pvu3g0496 278 MobiDBLite consensus disorder prediction 63 82 - -
Pvu3g0496 278 MobiDBLite consensus disorder prediction 22 82 - -
Pvu3g0496 278 Gene3D - 75 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0496 Pvu-Chr3 5720344 5722884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0496 18 278 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.156 2.85e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0496 HLH 2.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0496 - - gmx:102665879 379.793