Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0492 ATGGAGATCGCTCACGAGCCACCTCCTTCCCTCGACGGAGGCCCCATCCCCGTCGAGACACTCGCCAATTCTCCCTCGTCGTCTTCCCCTTCCTCCTCCTCTTCTTCCTCCTCCGCTTCGTCGCCGCGCGGTTCCAAGGGAAAGGAGGTCGAGTCGACCGCTTCGGCGACGGGGACGGCAGCCGCGCCAGCCAAGTACGATGACGAGGAGGAGGAGGAAGAGGACGTGTGCCGGATTTGCCGGAACCCTGGTGACGCCGAGAATCCACTCCGGTATCCGTGCGCGTGCAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAATGGCTTAATCACAGCAACGCGCGCCAATGCGAGGTCTGCAAACATGCATTTTCATTCTCTCCTGTTTATGCTGATAATGCCCCGGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCCTGCCATGTTCTTCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCTTAATTATACCTTTCATAACTTTCTGGATATGGCGATTAGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCGACAGCAGTTATCCTGACCGATTGCCTCCATGGTTTTCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATGGCTAGAAGGCCTCCTGTACAAGCTAATCGTAATGCCAATGCTGACGGGAATGGTGAAGATGCTGGTGGAGCGCAAGGAATTGCAGGTGCAGGTCAAGTAATTAGGAGAAATGCTGAAAACGTTGCTGCACGGTGGGAGATGCAAGCAGCACGACTTGAGGCACATGTTGAACAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCACTTGGTTGAAAATGCATTTACTGTGCTGGCGAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCATTCTCATTGGGTCGTATCATACTCCATTACCTATCCTGGTTCTTCTCAACTGCTAGTGGTCCTGTGTTGTCAGCTGTGGCCCCCCTTGCAGACACATCTCTTTCTCTGGCAAATATTACTTTAAAGAATGCATTAACAGCTGTTAAAAACTTGTCATCTGAAACTCAAGAAAGTGGACCAATTGGTCAGGTTGCAGAAATGATGAAAGCCAATTCTAGTGAATTGAGTGAAATGTCAAACAACATAACATCTGCCTCAGCTGTTATCTTGAAAGGAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTTACCACTCTAGCTATTGGATATGTTTTTATTCTTACTCTAATTTTCTGCTACTTCGGGATTGTTGCTGTAATTCGTTACACAAAGGGTGAGCCTTTGACCATGGGAAGGTTTTATGGCATTGCTTCTATAGCAGAAACAATTCCATCTCTCGTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACCATGGTTAAGGTTGCTTTCCTCTTAATCATTGAACTCGGGGTATTTCCTTTGATGTGTGGATGGTGGCTTGATGTTTGTACCATTCAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTTGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGTAATGGAGTTTTGTACTTCCTTCGGGACCCTGCGGATCCAAATTATAATCCATTTCGTGATCTTATAGATGATCCCGTGCACAAACATGCTCGCAGGGTTCTATTATCTGTCGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGGATGGCACCTTCCATTTTCCCACTAGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCTGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATAAAATCCCTACTGCGCTATTGGTTTACTGCTGTTGGTTGGGCTCTTGGTTTAACTGATTTCTTACTGCCTAGACCTGATGACAGTGTAAATCAAGATAATGGAAATGGGGAGCCAGGTAGGCAAGAAAGGCTACAAGTAGTACAAGCTGGAGTGCATGATCTGGGTTTGGTGCCATTTGCAGGTGATAATTTGAACAGGGCTGTTACTACAGTGGGAGAACTGAATGCTGGAGAGGATTATGATAATGATGAGCAATCCGACTCTGATTATGCCTTTGTGCTTCGCATAGTTCTCTTACTGGTGATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCTCTGATAGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATTTTATTCCTCGTCTTCCCATAACTCATGGCATTAAATGCAATGATCTGTATGCATTTATCATTGGAAGCTATGTAATCTGGACTGCCGTTGCTGGAGTTAGATACTCAATTGAACAGGTAAGAAGAAGGAGAGCTTCTGTTTTGTTTGGCCAAGTATGGAAATGGTGCGGCATTCTTGTGAAGAGTTCTGCACTTCTGTCTATATGGATATTCATTATCCCAGTGCTAATTGGTCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTTGATGAAAGTCCAGTATTCCTACTTTATCAAGACTGGGCATTAGGCCTTATATTTCTGAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTCAAATTTGAGAGGGTGAGAGAAGATGGGTTCTCCAGGTTGCAAGGTCTATGGGTCCTTCGGGAGATTGTACTTCCGATCATAATGAAGTTGTTGACGGCATTATGTGTACCTTATGTTTTGGCCAAAGGTGTATTTCCAGTTCTTGGGTATCCGTTGGTGATCAATTCTGCTGTTTATCGGTTTGCATGGTTGGGATGCCTATGTTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTCCATGTCTGGTTCACAAATCTTCATAACTCCATACGCGATGACCGGTATCTCATTGGCCGAAGGTTGCATAACTATGGAGAACATGTTGAGAAAGCAAATGAAGCAGGAACTTCTACAGAGTTGCAGGACACTATCTTACTTGGTACGGGCTTAAATCAACAAGATCATGATGCAGATGTTGGACTACGGTTGAGGCGTGTAAATCATCAACAGGTAGGCTGA 3372 0.4478 MEIAHEPPPSLDGGPIPVETLANSPSSSSPSSSSSSSSASSPRGSKGKEVESTASATGTAAAPAKYDDEEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYADNAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARMARRPPVQANRNANADGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTASGPVLSAVAPLADTSLSLANITLKNALTAVKNLSSETQESGPIGQVAEMMKANSSELSEMSNNITSASAVILKGGSIGTSRLSDVTTLAIGYVFILTLIFCYFGIVAVIRYTKGEPLTMGRFYGIASIAETIPSLVRQFLAAMKHLMTMVKVAFLLIIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDSVNQDNGNGEPGRQERLQVVQAGVHDLGLVPFAGDNLNRAVTTVGELNAGEDYDNDEQSDSDYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNFIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQVRRRRASVLFGQVWKWCGILVKSSALLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKANEAGTSTELQDTILLGTGLNQQDHDADVGLRLRRVNHQQVG* 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0492 1123 ProSiteProfiles Zinc finger RING-CH-type profile. 69 130 IPR011016 GO:0008270
Pvu3g0492 1123 Pfam RING-variant domain 77 123 IPR011016 GO:0008270
Pvu3g0492 1123 ProSiteProfiles Zinc finger RING-type profile. 77 124 IPR001841 -
Pvu3g0492 1123 MobiDBLite consensus disorder prediction 20 59 - -
Pvu3g0492 1123 PANTHER SSM4 PROTEIN 66 1065 - -
Pvu3g0492 1123 MobiDBLite consensus disorder prediction 1 70 - -
Pvu3g0492 1123 Coils Coil 294 314 - -
Pvu3g0492 1123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 135 IPR013083 -
Pvu3g0492 1123 PANTHER ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 66 1065 - -
Pvu3g0492 1123 SUPERFAMILY RING/U-box 71 127 - -
Pvu3g0492 1123 SMART ringv_2 76 124 IPR011016 GO:0008270
Pvu3g0492 1123 MobiDBLite consensus disorder prediction 246 283 - -
Pvu3g0492 1123 CDD RING_CH-C4HC3_MARCH6 76 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0492 Pvu-Chr3 5665489 5673351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0492 31 144 C3H Transcription Factor Family AT1G50440 30.081 5.02e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0492 K10661 - gmx:100813205 2020.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0492 3 5665489 5673351 Pvu3g0492 3 5665489 5673351 ECH