Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu3g0492 | ATGGAGATCGCTCACGAGCCACCTCCTTCCCTCGACGGAGGCCCCATCCCCGTCGAGACACTCGCCAATTCTCCCTCGTCGTCTTCCCCTTCCTCCTCCTCTTCTTCCTCCTCCGCTTCGTCGCCGCGCGGTTCCAAGGGAAAGGAGGTCGAGTCGACCGCTTCGGCGACGGGGACGGCAGCCGCGCCAGCCAAGTACGATGACGAGGAGGAGGAGGAAGAGGACGTGTGCCGGATTTGCCGGAACCCTGGTGACGCCGAGAATCCACTCCGGTATCCGTGCGCGTGCAGCGGGAGCATCAAGTTTGTGCATCAGGATTGTCTCCTTCAATGGCTTAATCACAGCAACGCGCGCCAATGCGAGGTCTGCAAACATGCATTTTCATTCTCTCCTGTTTATGCTGATAATGCCCCGGCTAGGTTACCTTTTCAAGAGTTTGTGGTTGGAATGGCAATGAAAGCCTGCCATGTTCTTCAATTCTTTTTGCGCCTGAGTTTTGTGCTATCTGTGTGGCTCTTAATTATACCTTTCATAACTTTCTGGATATGGCGATTAGCTTTTGTGAGGAGTTTAGGTGAAGCCCAGAGGTTATTCTTAAGCCATTTATCGACAGCAGTTATCCTGACCGATTGCCTCCATGGTTTTCTACTTTCTGCAAGCATTGTCTTCATTTTTCTTGGGGCCACTTCTTTGAGAGATTACTTTAGGCATTTGCGAGAAATTGGGGGACAGGATGCTGATAGAGAAGATGAAGTGGACAGAAATGGTGCTCGAATGGCTAGAAGGCCTCCTGTACAAGCTAATCGTAATGCCAATGCTGACGGGAATGGTGAAGATGCTGGTGGAGCGCAAGGAATTGCAGGTGCAGGTCAAGTAATTAGGAGAAATGCTGAAAACGTTGCTGCACGGTGGGAGATGCAAGCAGCACGACTTGAGGCACATGTTGAACAGATGTTTGATGGTCTGGATGATGCTGATGGAGCAGAAGATGTTCCCTTTGATGAACTTGTTGGCATGCAGGGTCCAGTTTTTCACTTGGTTGAAAATGCATTTACTGTGCTGGCGAGCAATATGATTTTCCTTGGTGTTGTAATCTTTGTGCCATTCTCATTGGGTCGTATCATACTCCATTACCTATCCTGGTTCTTCTCAACTGCTAGTGGTCCTGTGTTGTCAGCTGTGGCCCCCCTTGCAGACACATCTCTTTCTCTGGCAAATATTACTTTAAAGAATGCATTAACAGCTGTTAAAAACTTGTCATCTGAAACTCAAGAAAGTGGACCAATTGGTCAGGTTGCAGAAATGATGAAAGCCAATTCTAGTGAATTGAGTGAAATGTCAAACAACATAACATCTGCCTCAGCTGTTATCTTGAAAGGAGGGTCAATTGGAACTTCAAGGCTTTCTGATGTTACCACTCTAGCTATTGGATATGTTTTTATTCTTACTCTAATTTTCTGCTACTTCGGGATTGTTGCTGTAATTCGTTACACAAAGGGTGAGCCTTTGACCATGGGAAGGTTTTATGGCATTGCTTCTATAGCAGAAACAATTCCATCTCTCGTCAGGCAGTTTTTGGCAGCAATGAAGCATTTGATGACCATGGTTAAGGTTGCTTTCCTCTTAATCATTGAACTCGGGGTATTTCCTTTGATGTGTGGATGGTGGCTTGATGTTTGTACCATTCAGATGTTTGGGAAGACAATGGTTCACAGAGTTCAGTTCTTCTCTGCATCCCCTTTAGCAAGCTCATTGGTTCATTGGGTTGTTGGGATTGTGTACATGCTACAAATTAGCATATTTGTCAGCCTTCTTAGAGGGGTTTTACGTAATGGAGTTTTGTACTTCCTTCGGGACCCTGCGGATCCAAATTATAATCCATTTCGTGATCTTATAGATGATCCCGTGCACAAACATGCTCGCAGGGTTCTATTATCTGTCGCAGTTTATGGGAGTCTGATTGTGATGCTGGTATTCTTGCCTGTCAAACTTGCCATGCGGATGGCACCTTCCATTTTCCCACTAGACATATCGGTATCTGATCCATTCACTGAAATTCCAGCTGACATGCTTCTCTTTCAGATTTGTATCCCATTTGCTATTGAGCATTTTAAATTGAGGACAACTATAAAATCCCTACTGCGCTATTGGTTTACTGCTGTTGGTTGGGCTCTTGGTTTAACTGATTTCTTACTGCCTAGACCTGATGACAGTGTAAATCAAGATAATGGAAATGGGGAGCCAGGTAGGCAAGAAAGGCTACAAGTAGTACAAGCTGGAGTGCATGATCTGGGTTTGGTGCCATTTGCAGGTGATAATTTGAACAGGGCTGTTACTACAGTGGGAGAACTGAATGCTGGAGAGGATTATGATAATGATGAGCAATCCGACTCTGATTATGCCTTTGTGCTTCGCATAGTTCTCTTACTGGTGATTGCTTGGATGACTCTCCTTGTCTTCAACTCTGCTCTGATAGTTGTACCAATTTCACTTGGACGGGCACTTTTCAATTTTATTCCTCGTCTTCCCATAACTCATGGCATTAAATGCAATGATCTGTATGCATTTATCATTGGAAGCTATGTAATCTGGACTGCCGTTGCTGGAGTTAGATACTCAATTGAACAGGTAAGAAGAAGGAGAGCTTCTGTTTTGTTTGGCCAAGTATGGAAATGGTGCGGCATTCTTGTGAAGAGTTCTGCACTTCTGTCTATATGGATATTCATTATCCCAGTGCTAATTGGTCTTCTCTTTGAGCTTTTGGTCATTGTGCCAATGAGAGTTCCGGTTGATGAAAGTCCAGTATTCCTACTTTATCAAGACTGGGCATTAGGCCTTATATTTCTGAAGATATGGACTAGATTGGTTATGTTGGACCACATGATGCCTCTGGTGGATGAAAGTTGGCGAGTCAAATTTGAGAGGGTGAGAGAAGATGGGTTCTCCAGGTTGCAAGGTCTATGGGTCCTTCGGGAGATTGTACTTCCGATCATAATGAAGTTGTTGACGGCATTATGTGTACCTTATGTTTTGGCCAAAGGTGTATTTCCAGTTCTTGGGTATCCGTTGGTGATCAATTCTGCTGTTTATCGGTTTGCATGGTTGGGATGCCTATGTTTCAGTTTCTTGTGCTTCTGTGCCAAGAGATTCCATGTCTGGTTCACAAATCTTCATAACTCCATACGCGATGACCGGTATCTCATTGGCCGAAGGTTGCATAACTATGGAGAACATGTTGAGAAAGCAAATGAAGCAGGAACTTCTACAGAGTTGCAGGACACTATCTTACTTGGTACGGGCTTAAATCAACAAGATCATGATGCAGATGTTGGACTACGGTTGAGGCGTGTAAATCATCAACAGGTAGGCTGA | 3372 | 0.4478 | MEIAHEPPPSLDGGPIPVETLANSPSSSSPSSSSSSSSASSPRGSKGKEVESTASATGTAAAPAKYDDEEEEEEDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYADNAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSLGEAQRLFLSHLSTAVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLREIGGQDADREDEVDRNGARMARRPPVQANRNANADGNGEDAGGAQGIAGAGQVIRRNAENVAARWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFVPFSLGRIILHYLSWFFSTASGPVLSAVAPLADTSLSLANITLKNALTAVKNLSSETQESGPIGQVAEMMKANSSELSEMSNNITSASAVILKGGSIGTSRLSDVTTLAIGYVFILTLIFCYFGIVAVIRYTKGEPLTMGRFYGIASIAETIPSLVRQFLAAMKHLMTMVKVAFLLIIELGVFPLMCGWWLDVCTIQMFGKTMVHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSLLRYWFTAVGWALGLTDFLLPRPDDSVNQDNGNGEPGRQERLQVVQAGVHDLGLVPFAGDNLNRAVTTVGELNAGEDYDNDEQSDSDYAFVLRIVLLLVIAWMTLLVFNSALIVVPISLGRALFNFIPRLPITHGIKCNDLYAFIIGSYVIWTAVAGVRYSIEQVRRRRASVLFGQVWKWCGILVKSSALLSIWIFIIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRVKFERVREDGFSRLQGLWVLREIVLPIIMKLLTALCVPYVLAKGVFPVLGYPLVINSAVYRFAWLGCLCFSFLCFCAKRFHVWFTNLHNSIRDDRYLIGRRLHNYGEHVEKANEAGTSTELQDTILLGTGLNQQDHDADVGLRLRRVNHQQVG* | 1124 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu3g0492 | 1123 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 69 | 130 | IPR011016 | GO:0008270 | |
Pvu3g0492 | 1123 | Pfam | RING-variant domain | 77 | 123 | IPR011016 | GO:0008270 | |
Pvu3g0492 | 1123 | ProSiteProfiles | Zinc finger RING-type profile. | 77 | 124 | IPR001841 | - | |
Pvu3g0492 | 1123 | MobiDBLite | consensus disorder prediction | 20 | 59 | - | - | |
Pvu3g0492 | 1123 | PANTHER | SSM4 PROTEIN | 66 | 1065 | - | - | |
Pvu3g0492 | 1123 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
Pvu3g0492 | 1123 | Coils | Coil | 294 | 314 | - | - | |
Pvu3g0492 | 1123 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 61 | 135 | IPR013083 | - | |
Pvu3g0492 | 1123 | PANTHER | ZINC FINGER, RING-CH-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED | 66 | 1065 | - | - | |
Pvu3g0492 | 1123 | SUPERFAMILY | RING/U-box | 71 | 127 | - | - | |
Pvu3g0492 | 1123 | SMART | ringv_2 | 76 | 124 | IPR011016 | GO:0008270 | |
Pvu3g0492 | 1123 | MobiDBLite | consensus disorder prediction | 246 | 283 | - | - | |
Pvu3g0492 | 1123 | CDD | RING_CH-C4HC3_MARCH6 | 76 | 125 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu3g0492 | Pvu-Chr3 | 5665489 | 5673351 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu3g0492 | 31 | 144 | C3H Transcription Factor Family | AT1G50440 | 30.081 | 5.02e-06 | 47.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu3g0492 | K10661 | - | gmx:100813205 | 2020.36 |