Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0491 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGCTGGTGGTGGGGGAAACCAGTTTGTGACGACGTCGCTTTACGTCGGAGATCTCGACCCGAACGTCACGGACTCACAGCTGTATGATCTGTTCAATCAATTGGGCCAAGTCGTGTCTGTTAGGGTTTGCAGGGACTTGACCAGCAGAAGATCGCTCGGTTACGGTTACGTCAACTATAGCAACCCGCAAGATG 256 0.5469 MAQVQVQPQNAMPGPNGAAAAAGGGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQD 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0491 85 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 85 IPR000504 GO:0003723
Pvu3g0491 85 SUPERFAMILY RNA-binding domain, RBD 4 85 IPR035979 GO:0003676
Pvu3g0491 85 PANTHER POLYADENYLATE-BINDING PROTEIN 2 21 82 - -
Pvu3g0491 85 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 85 IPR000504 GO:0003723
Pvu3g0491 85 PANTHER RNA BINDING PROTEIN 21 82 - -
Pvu3g0491 85 Gene3D - 1 85 IPR012677 -
Pvu3g0491 85 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0491 Pvu-Chr3 5652990 5653695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0491 1 85 Eukaryotic Initiation Factors Gene Family AT4G34110 62.366 3.41e-30 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0491 K13126 - pvu:PHAVU_003G0475000 150.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0491 3 5652990 5653695 Pvu3g0491 3 5652990 5653695 ECH
Pvu8g1011 8 10444548 10447990 Pvu3g0491 3 5652990 5653695 ECH