Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0490 GCCAGAGCATTAGATGTTCTGAATTTCACTCCTCTCAATAACAAGCCCATCCGGATTATGTATTCACATCGTGATCCCAGTATCCGGAAAAGTGGGGCAGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGAAATATCCTTTCATGCAAGGTAGCTACAGATTCATCTGGGCAATCAAAAGGATATGGCTTTGTTCAATTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGTTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTTCTTCGCAAGCAAGAGAGAGAAGGTGCTATTGACAAAGCAAAATTCAATAATGTTTTTGTCAAGAATCTAGCAGAATCAACTACTGATGATGAATTGAAGGTGATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGCTTGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAACTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAGAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTAGATGATAGCATTGGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGCAAGGTTATGAGGGACCCGAATGGCGTAAGTCGAGGATCAGGATTTGTTGCATTCTCAACTCCTGAGGAGGCATCTAGAGCTCTCGCTGAGATGAATGGGAAAATGGTGGTAAGTAAACCTCTGTATGTGACTCTAGCTCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGGCCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTTCCAATGTATCCTCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGTTATCAACAACAACTTGTGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCTGGTGGAAGGCGTGCAGTCCAGCAGTCTCAGCAGCCAGTGCCAATGATGCCACAGCAGATGCTTCCTAGGGGACGTGTCTATCGTTATCCTCCCGGCAGGGGTATTCCTGATGTTCCTATGCCTGGGGTTGCTGGAGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCACTGCGTGATGCATCACACTCCCAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTCTACCCACTTGTGGAACAGTTAGAGCCTGATAATGCTGCAAAAGTCACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCACCAGAAGCGCTGAAAGCGAAGGTGGCTGAGGCGATGGATGTCCTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGTGGTGCTGCTGATCAGCTGGCTTCTTTATCACTTAATGACAACCCATGA 1686 0.4537 ARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQEREGAIDKAKFNNVFVKNLAESTTDDELKVIFGEFGTITSAVVMRDGDGKSKCLFVNFENADDAARAVEALNGKKLDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSIGDDKLKELFSPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASHSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNP* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0490 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 194 IPR000504 GO:0003723
Pvu3g0490 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 104 IPR000504 GO:0003723
Pvu3g0490 561 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 297 IPR000504 GO:0003723
Pvu3g0490 561 PANTHER POLYADENYLATE-BINDING PROTEIN 1 546 - -
Pvu3g0490 561 SUPERFAMILY RNA-binding domain, RBD 125 307 IPR035979 GO:0003676
Pvu3g0490 561 CDD RRM2_I_PABPs 32 108 IPR045305 -
Pvu3g0490 561 Gene3D - 115 209 IPR012677 -
Pvu3g0490 561 SUPERFAMILY RNA-binding domain, RBD 7 115 IPR035979 GO:0003676
Pvu3g0490 561 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 2 537 IPR006515 GO:0003723
Pvu3g0490 561 Gene3D - 23 114 IPR012677 -
Pvu3g0490 561 CDD RRM4_I_PABPs 226 304 - -
Pvu3g0490 561 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 464 541 IPR002004 GO:0003723
Pvu3g0490 561 Gene3D - 460 543 - -
Pvu3g0490 561 PANTHER RNA BINDING PROTEIN 1 546 - -
Pvu3g0490 561 MobiDBLite consensus disorder prediction 388 408 - -
Pvu3g0490 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 201 IPR000504 GO:0003723
Pvu3g0490 561 Gene3D - 210 312 IPR012677 -
Pvu3g0490 561 SMART rrm1_1 35 107 IPR000504 GO:0003723
Pvu3g0490 561 SMART rrm1_1 126 197 IPR000504 GO:0003723
Pvu3g0490 561 SMART rrm1_1 228 300 IPR000504 GO:0003723
Pvu3g0490 561 SUPERFAMILY PABC (PABP) domain 405 557 IPR036053 GO:0003723
Pvu3g0490 561 SMART poly_2 476 539 IPR002004 GO:0003723
Pvu3g0490 561 Pfam Poly-adenylate binding protein, unique domain 472 536 IPR002004 GO:0003723
Pvu3g0490 561 SMART rrm2_1 228 300 IPR003954 GO:0003676
Pvu3g0490 561 SMART rrm2_1 35 107 IPR003954 GO:0003676
Pvu3g0490 561 SMART rrm2_1 126 197 IPR003954 GO:0003676
Pvu3g0490 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 106 IPR000504 GO:0003723
Pvu3g0490 561 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 304 IPR000504 GO:0003723
Pvu3g0490 561 Coils Coil 199 223 - -
Pvu3g0490 561 CDD RRM3_I_PABPs 124 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0490 Pvu-Chr3 5644470 5647556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0490 1 560 Eukaryotic Initiation Factors Gene Family AT1G49760 74.087 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0490 K13126 - gmx:100813735 1004.2