Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0477 ATGGGAAGGTCACCATGCTGTGAGAAGACGGGGCTGAAAAAAGGACCATGGACACCAGAAGAAGACCAGAAGCTCATTGCTTTCATTGAAAAGCATGGCCATGGAAGCTGGCGTGCTTTGCCTGCAAAAGCTGGACTTCGAAGATGTGGAAAGAGTTGCAGACTTAGGTGGACTAATTATCTCCGACCTGATATAAAAAGAGGAAAGTTCAGCTTGGAGGAAGAGCAAACCATTATTCAACTTCATGCTCTTCTAGGAAACAG 263 0.4563 MGRSPCCEKTGLKKGPWTPEEDQKLIAFIEKHGHGSWRALPAKAGLRRCGKSCRLRWTNYLRPDIKRGKFSLEEEQTIIQLHALLGN 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0477 87 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu3g0477 87 CDD SANT 16 61 IPR001005 -
Pvu3g0477 87 SUPERFAMILY Homeodomain-like 15 87 IPR009057 -
Pvu3g0477 87 Gene3D - 13 66 - -
Pvu3g0477 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pvu3g0477 87 PANTHER TRANSCRIPTION FACTOR MYB106 1 87 - -
Pvu3g0477 87 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu3g0477 87 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 87 IPR017930 -
Pvu3g0477 87 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 87 - -
Pvu3g0477 87 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0477 Pvu-Chr3 5492916 5493618 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0477 1 87 MYB Transcription Factor Family AT5G15310 88.506 1.33e-55 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu3g0477 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0477 K09422 - gmx:100792994 187.193