Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0476 ATGGGAAGGAAGGCATGTTGTGAGAACCTAGGGTTGAAGAAAGGACCGTGGACACCAGAAGAAGACAAGAAGCTCCTCGACTACGTTGGGAAGCACGGTCATCGAAACTGGCGTTTAGTGCCTGCCAAAGCGGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGAAACTTCAGCACGGAGGAAGACCACACCATTATTAAACTTCATGCTCTTCTTGGAAACAAATGGTCCATCATAGCAGCCCACCTGCCCCAAAGAACCGACAATGAGATCAAGAACTACTGGAAAACCAACATCAAGAAAAGACTCATCGGAATGGGCTTAGATCCCATTACCCACAAAACAATAAAACAGAACACATTTGAATGCTGTGGTGATGGCCAAGACCAGTCCAAGGACACCATCAATATCAGGCACGTGGCTCAGTGGGAGAGGGCCCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGGATCTGGATCCTCAAATCTCTCTGGGCTAATCTTAAGCAAGATTCCAACTCAACCTTGTCTTTCATCACATTCAGTGTCAACCGAACACAAGAGAGTGCATAACATGTATGCCCTTGTGCTTACCACAAATCATGATTTTAGGTCATCTGTATCCACTTTGAGCATTCCCAAGCTTCCTGCAGTTTCTAATATTCCACAAATCACCAACACAGAAAGTTTACTTACATATAAGGCTGACAATAATGTCATGGAAGGCTGTGTTTCAAACTTACAAGATGATGACATTATGGTGGCTGTGGAAGCATTTAGAACAGCAAGGTCTGAGGGTATTGAAGAGCTGTTCAATGAATTTACTTCCATGTAG 882 0.4388 MGRKACCENLGLKKGPWTPEEDKKLLDYVGKHGHRNWRLVPAKAGLERCGKSCRLRWINYLKPDIKRGNFSTEEDHTIIKLHALLGNKWSIIAAHLPQRTDNEIKNYWKTNIKKRLIGMGLDPITHKTIKQNTFECCGDGQDQSKDTINIRHVAQWERARLEAEARGSMLQVGSGSSNLSGLILSKIPTQPCLSSHSVSTEHKRVHNMYALVLTTNHDFRSSVSTLSIPKLPAVSNIPQITNTESLLTYKADNNVMEGCVSNLQDDDIMVAVEAFRTARSEGIEELFNEFTSM* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0476 293 CDD SANT 69 112 IPR001005 -
Pvu3g0476 293 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu3g0476 293 CDD SANT 16 61 IPR001005 -
Pvu3g0476 293 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pvu3g0476 293 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu3g0476 293 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu3g0476 293 Gene3D - 69 116 - -
Pvu3g0476 293 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu3g0476 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 194 - -
Pvu3g0476 293 Gene3D - 13 66 - -
Pvu3g0476 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pvu3g0476 293 PANTHER TRANSCRIPTION FACTOR MYB106 1 194 - -
Pvu3g0476 293 SMART sant 13 63 IPR001005 -
Pvu3g0476 293 SMART sant 66 114 IPR001005 -
Pvu3g0476 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0476 Pvu-Chr3 5443682 5444805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0476 1 194 MYB Transcription Factor Family AT3G01140 58.586 2.03e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0476 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0476 K09422 - gmx:100790887 431.024