Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0470 ATGGGAAGGAAGGCATGTTGTGAGAAGCTAGGGTTGAAGAAAGGACGATGGACACCAGAAGAAGACAAGAAGCTCCTCGACTACGTTGAAAAGCATGGCCATCGAAACTGGCGTTTAGTGCCTGCCAAAGCGGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGAAACTTCAGCACGGAGGAAGACCACACCATTATTAAACTTCACGTTCTTCTTGGAAACAAATGGTCCATCATAGCAGCCCACCTGCCCCAAAGAACAGACAATGAGATCAAGAACTACTGGAAAACCAACATCAAGAAAAGACTCATCAGAATGAGCTTAGATCCCATTACCATTACCCACAAAACAATAAAACAGAACACATTTGAAGGCTGTGGTGATGGCCAAGACCAGTCCAAGGACACCATCAATATCACGCACGTGGCTCAGTGGGAGAGGGCCCGATTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGGATCTGGATCCTCAAATCTCTCTGGGCTAATCTTAAGCAAGATTCCAACTCAACCTTGTCTTTCATCACATTCAGTGTCCACCGAACACAAGAGAGTGCATAACATGTATGCCCTCGTGCTTACCACAAATCATGATTTTAGGTCATCTGTATCCACTTTGAGCATTCCCAAGCTTCCTGCAGTTTCTAATATTCCACAAATCACCAACACAGAAAGTTTACTTACATATAAGGCTGACAATAATGTCATGGAAGGCTGTGTTTCAAACTTACAAGATGATGACATTATGCTGGCTGTGGAAGCATTTAGAACAGCAAGGTCTGAGAGTATTGAAGAGCTGTTCAATGAGTTTACTTCCATGTAG 888 0.4336 MGRKACCEKLGLKKGRWTPEEDKKLLDYVEKHGHRNWRLVPAKAGLERCGKSCRLRWINYLKPDIKRGNFSTEEDHTIIKLHVLLGNKWSIIAAHLPQRTDNEIKNYWKTNIKKRLIRMSLDPITITHKTIKQNTFEGCGDGQDQSKDTINITHVAQWERARFEAEARGSMLQVGSGSSNLSGLILSKIPTQPCLSSHSVSTEHKRVHNMYALVLTTNHDFRSSVSTLSIPKLPAVSNIPQITNTESLLTYKADNNVMEGCVSNLQDDDIMLAVEAFRTARSESIEELFNEFTSM* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0470 295 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Pvu3g0470 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu3g0470 295 CDD SANT 69 112 IPR001005 -
Pvu3g0470 295 Gene3D - 13 66 - -
Pvu3g0470 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu3g0470 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pvu3g0470 295 SMART sant 13 63 IPR001005 -
Pvu3g0470 295 SMART sant 66 114 IPR001005 -
Pvu3g0470 295 CDD SANT 16 61 IPR001005 -
Pvu3g0470 295 Gene3D - 68 137 - -
Pvu3g0470 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu3g0470 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 196 - -
Pvu3g0470 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pvu3g0470 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu3g0470 295 PANTHER TRANSCRIPTION FACTOR MYB106 1 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0470 Pvu-Chr3 5246545 5247708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0470 1 196 MYB Transcription Factor Family AT3G01140 57.000 2.84e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0470 Myb_DNA-binding 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0470 K09422 - gmx:100785734 429.483