Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0456 ATGGAGAGAAGAGGGGATGTAGCTCTCTTTTGTTTAGCTTTGTTCTTCCTGTCTACTTCAGTGGTTGGTTTGCTTTCTCCCAAAGGTGTCAACTATGAAGTTCAAGCTTTGATGAGCATTAAGAACTCTCTGATGGATCCTCATTCTGTCTTGGGTAACTGGGATGCGGATGCTGTAGATCCTTGCAACTGGGCTATGGTCACATGTTCTTCTGATCATTTTGTCACTGCCCTTGGGATTCCAAGCCAAAATATATCTGGTCGTCTCTCACCAAGCATAGGCAGTTTAACAAACCTCCTCACTGTGCTTCTGCAGGACAACAATATCACAGGACCAATCCCCTCTGAGATTGGAAAGCTCCAAAAGCTTCAAACTCTTGATCTTTCTGACAATTTCTTTACTGGTCAACTTCCAGATTCTCTTTCCCAAATGAAGGGTCTCCATTACTTGCGGCTAAACAATAACAGTCTCACTGGACCAATTCCTTCCTCTTTAGCTAACATGACACAACTTGCTTTTCTGGACATCTCTTATAACAACTTGAGTGAATCTGTACCAAGAATAAATGCAAAAACATTCAATATCGTAGGCAATCCTCAGATATGTGCCACTGGAGTCGAGCAGAACTGCTTCAAAACAACGCCAATTCCTTCAGCTCCAAATAATTCTCAGGATTCACGATCCACCAAAGGACCAAAGAGTCACAAAGTAGCCTTGGCGTTTGCTTCAAGCATAAGCTGCATAGGCTTACTAATTCTGGGACTTGGCTTCCTCATCTGGTGGAGACAAAGACATAACAAGCAAATATTCTTTGATGTTAATGAACAACACCGTGAAGAGGTTTTCCTTGGAAACCTCAAGAAGTTCCACTTCAGAGAACTTCAACTTGCTACAAAAAACTTCAGCAGCAAGAACTTGATTGGCAAAGGTGGTTTTGGAAATGTCTACAAAGGGTATCTCCAAGATGGTACAGTTATAGCAGTGAAAAGGCTCAAAGATGGTAACGCCATTGGAGGTGAGATCCAATTCCAGACTGAAGTTGAGATGATCAGCTTAGCCGTCCATCGGAATCTTCTTCGACTATATGGATTCTGCATGACAACTACAGAGAGGCTCTTGGTTTATCCGTACATGTCAAATGGAAGTGTCGCTTCCCGTCTGAAAGCCAAGCCAGCTTTGGACTGGCCTACGAGGAAGAGAATAGCTTTAGGAGCTGGAAGAGGCTTGCTGTATTTGCATGAACAGTGTGATCCAAAGATTATTCACAGGGATGTGAAAGCAGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTGGTGGGAGATTTTGGGCTGGCAAAGCTGTTAGATCACAGGGATTCACATGTGACAACAGCAGTGAGAGGCACTGTGGGACACATAGCCCCTGAGTATCTCTCAACAGGTCAATCTTCTGAGAAAACAGATGTGTTTGGGTTTGGAATTCTTCTTCTTGAACTAATATCTGGCCAAAGGGCTCTTGAGTTTGGGAAAGCAGCAAACCAAAAAGGAGCCATGCTAGACTGGGTGAAGAAAATCCATCAAGAGAAGAAAATTGACTTGTTGGTTGACAAGGACCTGAAAAACCACTATGATAGGATTGAGCTTGATGAAATTGTGCAAGTGGCTCTTTTATGTACTCAGTACCTTCCAAGTCACAGACCCAAGATGTCTGAAGTGGTTAGGATGCTTGAAGGAGATGGTCTTGCAGAGAAATGGGAAGCCTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCCTCTTCAGAGCGCTACTCTGATCTCACTGATGATTCTTCATTACTTACACAAGCAATGGAACTTTCTGGGCCAAGATGA 1866 0.4319 MERRGDVALFCLALFFLSTSVVGLLSPKGVNYEVQALMSIKNSLMDPHSVLGNWDADAVDPCNWAMVTCSSDHFVTALGIPSQNISGRLSPSIGSLTNLLTVLLQDNNITGPIPSEIGKLQKLQTLDLSDNFFTGQLPDSLSQMKGLHYLRLNNNSLTGPIPSSLANMTQLAFLDISYNNLSESVPRINAKTFNIVGNPQICATGVEQNCFKTTPIPSAPNNSQDSRSTKGPKSHKVALAFASSISCIGLLILGLGFLIWWRQRHNKQIFFDVNEQHREEVFLGNLKKFHFRELQLATKNFSSKNLIGKGGFGNVYKGYLQDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTTTERLLVYPYMSNGSVASRLKAKPALDWPTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAMLDWVKKIHQEKKIDLLVDKDLKNHYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLTQAMELSGPR* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0456 621 SMART serkin_6 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g0456 621 Pfam Protein kinase domain 302 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g0456 621 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Pvu3g0456 621 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 6 621 - -
Pvu3g0456 621 MobiDBLite consensus disorder prediction 578 621 - -
Pvu3g0456 621 SUPERFAMILY L domain-like 32 195 - -
Pvu3g0456 621 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Pvu3g0456 621 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 621 - -
Pvu3g0456 621 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Pvu3g0456 621 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Pvu3g0456 621 MobiDBLite consensus disorder prediction 588 615 - -
Pvu3g0456 621 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Pvu3g0456 621 SUPERFAMILY Protein kinase-like (PK-like) 279 571 IPR011009 -
Pvu3g0456 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Pvu3g0456 621 Gene3D Transferase(Phosphotransferase) domain 1 378 590 - -
Pvu3g0456 621 ProSiteProfiles Protein kinase domain profile. 301 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0456 Pvu-Chr3 5040124 5045381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0456 8 621 Receptor kinase-like Gene Family AT5G16000 74.080 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Pvu3g0456 Pkinase 5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0456 - - gmx:100790194 1148.65