Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0436 ATGGGAAAAAGAGTTGTGTCCTTTGTTCTTCCCTACAGAGCCTTGTTTTTCTCCTCCACTCCTGAAACCCCCACCCTTTACTCCTTCCTTCAGCCCTCAATCTTTGCCCTCACCAAAAACAAGCAGCAACCCATTTCAGAAGCCTCCCCAAAGGCCCCAACTTGCCTCTCAACTTCCCAACTCTCCACTCTCCAAACCACCCTCCACAAGTCCCTCATAAGCAGCAACACTGATGAGGCATGGAAGTCCTTCAAGGCCCTCACCACCCACCAAGCTTTTCCTCCCAAACCCCTCACCAACTCCCTCCTCTCCCACCTCTCCTCCCTTGGTGACACCCTCAACCTCAAGAGGGCCTTTGCCTCTGCTCTCTTTCTCATGGAGAAGAACCCCTTGCTGCTCCAACATGACACCCTCCACCACATGCTCCTCTCCATGAAGGGTGCCAACACTGCGGCCCCTGCCTTTGCCCTTGTCAGGTCCATGCTCAGGTTCAGGTTCTTTGTTCCCTTTCATATTTGGGGGCCTGTGCTTGTTGAGATCAGTAGGGACTGTGGTAACCTTGCTGCTTTCTTGAGGCTCTTTGAGGAGAATTGTAGGGTAGCTCTTGAGGAGAGAGTTGAGTTCATGAAGCCTGATGTTGTTGCTTGCAATGCAGCATTGGAAGGTTGCTGCTTTGAGCTTGAGTCTGTAAGTGATGCTGAGAGGGTTGTGGGGACAATGTCAAATTTAGGGGTTAGGCCTGATGAGTCCAGTTTTGGGTTTCTGGGGTATTTGTATGCACTCAAAGGGTTGGAAGAGAAGATTAGGGAGTTAGAAGTTTTGATGGGTGGGTTTGGCTGTTTAAACAAAAAGGGTTTTTATTGTAATTTGATTAGGGGTTACGTTAAGTCAGAGAATTTGGCTTCTGTGGAGGCAACTATTGTTAGATATCTGAATGATGGAGGTGGGAAGGATTGGGGTTTTGATGTTGAAACTTTCTGTGAAGTGATTAAGGTTTATTTTCAGAAGGGAAATGTCAAGGGGTTGGCCAATTTGATTGTTGATGCTCAGAAGATAGAGGGTTCAAATATTGTGATTGATAGGTCTATAGGGTATGGTATTGTTAATGCCTGTGTTAGTATTGGACTATCTGATAAAGCACATAGTATTCTTGATGAGATGAATGTTCAGGGGGCCTCTGCGGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGTAAAGAAAATAGAACTGCTGAGGCTACTCAGTTGGTGATGGAGATTAGTAATTCAGGTCTTCAGTTGGATGTGGAAAGCTATGATGCTTTGATAGAAGCATCCATGTGCAGCCAAGATTTTCAGTCAGCGTTTTCACTGTTTAGGGACATGAGAGAAGCAAGGATTCCTGACTTGAAAGGGAGTTACTTAACTATAATGACAGGTTTGATGGAGAAGCATCGGCCGGAGTTGATGGCAGCTTTCTTGGATGAGGTGGTTGAGGATCCTAGGATTGATGTAGGTACTCATGATTGGAATTCTATCATCCATGCTTTCTGTAAAGCTGGGAGACTAGAAGATGCGAGAAGGACTTTTAGAAGGATGACTTTCCTGCAGTTTGAGCCAAATGATCAGACATACTTGTCTATGATTAATGGATATGTCTTGGCAGAGAAATATTTTCTTGTGCTGATGTTGTGGAACGAGGTTAAGAGGAAGCTATCCATGGATGGGCAGAAGGGGATCAAGTTTGACCAGAATTTGGTTGATGCATTCCTTTATGCTATGGTCAAGGGTGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAGAAAGCTAATGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAGGGTGGCAAAGTTAAGGAGAAAGAATTTTAGAAAAATGGAAGCAATTATCGCTTTCAAGAACTGGGCTGGCTTAAATGCCTGA 1968 0.4477 MGKRVVSFVLPYRALFFSSTPETPTLYSFLQPSIFALTKNKQQPISEASPKAPTCLSTSQLSTLQTTLHKSLISSNTDEAWKSFKALTTHQAFPPKPLTNSLLSHLSSLGDTLNLKRAFASALFLMEKNPLLLQHDTLHHMLLSMKGANTAAPAFALVRSMLRFRFFVPFHIWGPVLVEISRDCGNLAAFLRLFEENCRVALEERVEFMKPDVVACNAALEGCCFELESVSDAERVVGTMSNLGVRPDESSFGFLGYLYALKGLEEKIRELEVLMGGFGCLNKKGFYCNLIRGYVKSENLASVEATIVRYLNDGGGKDWGFDVETFCEVIKVYFQKGNVKGLANLIVDAQKIEGSNIVIDRSIGYGIVNACVSIGLSDKAHSILDEMNVQGASAGLGVYIPILKAYCKENRTAEATQLVMEISNSGLQLDVESYDALIEASMCSQDFQSAFSLFRDMREARIPDLKGSYLTIMTGLMEKHRPELMAAFLDEVVEDPRIDVGTHDWNSIIHAFCKAGRLEDARRTFRRMTFLQFEPNDQTYLSMINGYVLAEKYFLVLMLWNEVKRKLSMDGQKGIKFDQNLVDAFLYAMVKGGFFDAVMQVVEKANEMKIFVDKWRYKQAFMETHKKLRVAKLRRKNFRKMEAIIAFKNWAGLNA* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0436 655 TIGRFAM PPR: pentatricopeptide repeat domain 505 536 IPR002885 -
Pvu3g0436 655 Pfam PPR repeat family 505 547 IPR002885 -
Pvu3g0436 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 247 IPR002885 -
Pvu3g0436 655 Gene3D Tetratricopeptide repeat domain 391 463 IPR011990 GO:0005515
Pvu3g0436 655 PANTHER BNAC05G43320D PROTEIN 2 655 - -
Pvu3g0436 655 Gene3D Tetratricopeptide repeat domain 59 355 IPR011990 GO:0005515
Pvu3g0436 655 Pfam Pentatricopeptide repeat domain 418 462 IPR002885 -
Pvu3g0436 655 Pfam PPR repeat 368 388 IPR002885 -
Pvu3g0436 655 Gene3D Tetratricopeptide repeat domain 464 620 IPR011990 GO:0005515
Pvu3g0436 655 PANTHER OS01G0788900 PROTEIN 2 655 - -
Pvu3g0436 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0436 Pvu-Chr3 4729203 4733507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0436 367 566 Miscellaneous Gene Families AT4G11690 23.077 1.70e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0436 - - gmx:100811600 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0436 3 4729203 4733507 Pvu3g0436 3 4729203 4733507 ECH