Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0418 ATGGCGATGACGCAAGGGGTGCAGAAGAACACACTGTACGTGGGAGGGTTAGCGGAGGAGGTCAACGAGTCAATCCTCCACGCCGCCTTCATCCCCTTCGGCGACATCAAGGACGTCAAGACGCCACTCGACCAGGCCACGCAGAAGCACCGCTCATTCGGCTTCGTCACCTTCCTCGAGCGAGAAGACGCCACCGCCGCCATGGACAACATGGACGGAGCCGAGCTCTACGGCCGCGTCCTCACCGTCAACTACGCCCTCCCCGAACGCATCAAAGGCGGTGAACAAGGCTGGGCCGCCCAACCTATTTGGGCGGATGCCGATACCTGGTTTGAGCGGCAGCAGCAGGAGGAGGAGATGCGGCGGATTGAGACCGAGAATCGCGCGGCGATGCAGGCGGCGGAGGACTTGCACCGGAAACAAGTGGCGGAACAGCGAGAGGGAGAGAAGGAAGAGGAAAGTGAGACGAAGGAGGATCCTATGGCCAAGGCTGAAGCTGAGGGTCTACAACAATAG 516 0.6085 MAMTQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDATAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIETENRAAMQAAEDLHRKQVAEQREGEKEEESETKEDPMAKAEAEGLQQ* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0418 171 PANTHER TRANSFORMER-2-RELATED 4 171 - -
Pvu3g0418 171 Coils Coil 113 140 - -
Pvu3g0418 171 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Pvu3g0418 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Pvu3g0418 171 MobiDBLite consensus disorder prediction 118 171 - -
Pvu3g0418 171 SMART rrm1_1 11 84 IPR000504 GO:0003723
Pvu3g0418 171 MobiDBLite consensus disorder prediction 118 164 - -
Pvu3g0418 171 CDD RRM_PPIE 12 84 IPR034168 GO:0003723
Pvu3g0418 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Pvu3g0418 171 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E 4 171 - -
Pvu3g0418 171 Gene3D - 2 94 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0418 Pvu-Chr3 4406929 4407951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0418 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.95e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0418 - K09564 gmx:100809447 304.679