Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0408 ATGGAATCTTGGAGTTATGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAGTCGAAGAACATTGGTTGAATGGGACAACAAATCCAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAGTTTGTGGACTTGGGATTCCCTGACTTGTTGCAGAAGTCTTTTCATGGTAGCCAACCTCTAGAGACATCAAGCTATGAACTAGATAGTAATTCTAGTAAAAGAGGGAATTCCTCCACGCATGTCATTGCTTTGGATTCTACTATGGGGGAAGAAGAGTCTGATTCAAAGCATTTAAGTTCTCTAGTTGAAGCAAAGATTCATGATTCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGTTACAAAAGAAGGGTTTACTTTGACATCTATACATCAAACCACGCTTTCAAAGAGAGCTCGCACTTCCAGCTTATCTGCACAGGCTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATAAAGTTTGTGATGCTCACTCCAAAACAGCCAAAGTTATTGTAAATGGCCTTGAACAAAGGTTTTGTCAGCAGTGCAGCAGGTTCCATGTGCTAGCTGAGTTTGATGATGGCAAGCGCAGTTGTCGCAGGCGCCTAGCAGGACACAATGAACGCCGGAGGAAACCTCAATTTGATTACATGACTGGTAAACAGCACAAGATTCTTCAATCATATCAAGGTACCAAGTATCTTGGGACCTCATTACAGAACAAACCCCAGTTTCCCTTTCAAAACATATTCCAAAGTGGCATCCTTTTCCCTGGAAAGCATGCTCAGAATTCTCAGAACGGACGCATCAAACTGGAAGAGGATTCCTTGTACAGTTCCCAACTTGCTGCACCCGTCACACTTGGTCAGGAATTATCAAGCTGTGCTCTCTCTCTTCTGTCAGACCAGTCACAGTATCCATCACGCCATGCAGCAGGAAATCCATTAGCCAGTTCCCCAATCCTTCACGGCATTCACATTCAAGACAGAGATGACTTAGTTTCCGAAACATCTTTGAGGATAACAAGTTCTGCAGATAAATATGCCCCAAATGAGTCCTTTTCATGCAACACAGCCTCTAAGGAAGTTATCAAGAATCAATCCGCACCATTCTCTAATGCTGGTCATGCTCTTCAAGACCATCATGGAGATGATATTTGCCAACCATCAGACTTGTTCGACGTCAAACACCGTCTTTCCTCGGAACATGGAGCTACAGTTGATCTGTTCCAGTTGTCCTCACATCTCCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTGAAGTGGGAAAATGAGGACTACTGTTTCCCAACTGTATGA 1443 0.4248 MESWSYVPEEKGYLFSDEMDFSLDAFMRSRRTLVEWDNKSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGSQPLETSSYELDSNSSKRGNSSTHVIALDSTMGEEESDSKHLSSLVEAKIHDSSLIDLKLGRLADCKGASSDKVTKEGFTLTSIHQTTLSKRARTSSLSAQAPVCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGLEQRFCQQCSRFHVLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQGTKYLGTSLQNKPQFPFQNIFQSGILFPGKHAQNSQNGRIKLEEDSLYSSQLAAPVTLGQELSSCALSLLSDQSQYPSRHAAGNPLASSPILHGIHIQDRDDLVSETSLRITSSADKYAPNESFSCNTASKEVIKNQSAPFSNAGHALQDHHGDDICQPSDLFDVKHRLSSEHGATVDLFQLSSHLQRVEQQRNSVLVKWENEDYCFPTV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0408 480 ProSiteProfiles Zinc finger SBP-type profile. 176 253 IPR004333 GO:0003677
Pvu3g0408 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 42 321 - -
Pvu3g0408 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 329 479 - -
Pvu3g0408 480 Pfam SBP domain 179 252 IPR004333 GO:0003677
Pvu3g0408 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 329 479 IPR044817 GO:0003677
Pvu3g0408 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 321 IPR044817 GO:0003677
Pvu3g0408 480 Gene3D - 169 240 IPR036893 GO:0003677|GO:0005634
Pvu3g0408 480 SUPERFAMILY SBT domain 177 258 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0408 Pvu-Chr3 4192652 4197250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0408 1 478 SBP-box Gene Family AT1G69170 34.851 1.48e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu3g0408 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0408 - - gmx:100820149 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0408 3 4192652 4197250 Pvu3g0408 3 4192652 4197250 ECH