Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0406 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGTCAAGTGACATTTGCAAAGAGGAGGAATGGGTTGCTCAAGAAGGCTTATGAACTCTCTGTCCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTGGCCCTAGGTTTTCTTCAAGTTCTGAGGGTGTTTTGTTTTCTGGGGTTCTTGATTTTCCCTCCCTGGTTTCATGGACTACTTAA 261 0.4636 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGPRFSSSSEGVLFSGVLDFPSLVSWTT* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0406 86 CDD MADS_MEF2_like 2 59 IPR033896 GO:0000977|GO:0045944
Pvu3g0406 86 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu3g0406 86 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu3g0406 86 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Pvu3g0406 86 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 60 - -
Pvu3g0406 86 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 60 - -
Pvu3g0406 86 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g0406 86 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Pvu3g0406 86 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g0406 86 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g0406 86 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu3g0406 86 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0406 Pvu-Chr3 4119351 4119686 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0406 1 61 MADS-box Gene Family AT2G03710 95.082 4.56e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pvu3g0406 SRF-TF 3.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0406 K09264 - mnt:21409117 124.02