Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0404 ATGGGAAGGTCTAGGGTACAGCTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGGTGGGCTGTTCAAGAAAGCTAATGAGATCTCTGTACTCTGTGATGCTGAGGTAGCTTTGATTGTCTTCTCTCACAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCGTATGCAGAGAGGCAGCTACTAGGAAATGATTCTGAGACACAGGGAAACTGGACCATTGAATATTCTAGACTCAAGGCAAAGATTGACCTTTTGCAGAGAAACTACAGGCCCTATATGGGAGAAGATTTGGCTTCGATGAGCCTCAAAGAGCTTCAGAGTTTGGAGCAGCAGTTAGATACTTCTGTCAAAAACATCCGCACTAGGAGGAACGATCTCATCCACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAATGGATACAAGAGCAGAATAGCATCCTTGCAAACAAGATCAAGGAGAAAGAGGAGGCTGTAGCACAACATGCTGTACAATGGGAACAGACAAACTACAAGGTTGACACATCTTTCTTACCACAGCAACAACCCCTTCCTAGTTTGAACATAGGTGGCAGTAGTTTCAATCAAGAAGCTGCACCAGAAATAGGAAGGAACGGTCTTGACCTGACCCTGGAACCACTGTTTTCTTGCCACCTTGGATGCTTCTGA 729 0.4472 MGRSRVQLKRIENKINRQVTFSKRRGGLFKKANEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLLGNDSETQGNWTIEYSRLKAKIDLLQRNYRPYMGEDLASMSLKELQSLEQQLDTSVKNIRTRRNDLIHESISELQKKEKWIQEQNSILANKIKEKEEAVAQHAVQWEQTNYKVDTSFLPQQQPLPSLNIGGSSFNQEAAPEIGRNGLDLTLEPLFSCHLGCF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0404 242 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g0404 242 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g0404 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 221 - -
Pvu3g0404 242 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 221 - -
Pvu3g0404 242 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pvu3g0404 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu3g0404 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g0404 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g0404 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu3g0404 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g0404 242 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pvu3g0404 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu3g0404 242 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Pvu3g0404 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0404 Pvu-Chr3 4092288 4096246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0404 1 242 MADS-box Gene Family AT1G26310 59.922 4.54e-103 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu3g0404 K-box 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0404 K09264 - gmx:100819745 420.624