Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0403 ATGGGTTGCTGCATGTCTTGTCTTACCGGAAGACACCATCCTGAGGATGAGGATCAGAGAAGTGATGATCACAATGCCACTCACTTTCCTCAAGATCAAGATCCACTTCCTCTCTCTACATACGGGTATGATAAGTTATATGCGGCGGAAGGTGGTGGAATCAACCGTCGTCCGAGCTTTTCAGAATACACTCATACTCTATACTCTACATCCTCCACCGCCGACGAGGATGTCTGTCCTACATGTTTTGAAGAATATTGTGAAGAAAATCCTAAAATTACAGCAAAGTGCAAACATCATTACCATCTTGGGTGTATATATGAGTGGAAGGAGAGGAGTGAAACTTGTCCAACTTGTAGGAAGGTGCTTGATTTTTCTGAATCATAG 387 0.4315 MGCCMSCLTGRHHPEDEDQRSDDHNATHFPQDQDPLPLSTYGYDKLYAAEGGGINRRPSFSEYTHTLYSTSSTADEDVCPTCFEEYCEENPKITAKCKHHYHLGCIYEWKERSETCPTCRKVLDFSES* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0403 128 MobiDBLite consensus disorder prediction 14 29 - -
Pvu3g0403 128 SMART ring_2 79 119 IPR001841 -
Pvu3g0403 128 ProSiteProfiles Zinc finger RING-type profile. 79 120 IPR001841 -
Pvu3g0403 128 SUPERFAMILY RING/U-box 64 125 - -
Pvu3g0403 128 MobiDBLite consensus disorder prediction 14 36 - -
Pvu3g0403 128 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 61 127 - -
Pvu3g0403 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 126 IPR013083 -
Pvu3g0403 128 Pfam RING-H2 zinc finger domain 76 120 IPR024766 GO:0008270
Pvu3g0403 128 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 61 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0403 Pvu-Chr3 4086487 4088078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0403 13 128 C3H Transcription Factor Family AT5G15790 44.628 5.66e-25 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0403 - - pvu:PHAVU_003G039100g 288.885