LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g0400	ATGAACGCTGTCATATGCTCTGGGTACATTTTTATCTTGTATCTCTTAAACTTACAACTAGTTGCAGTTGCTGATAATGGCAGTTATGTTCCTACAGAGAACATAGTTCTCAACTGCGGCTCCAGCACATCAGAATTTGTACAATATGATGGCAGGAATTGGAGTGGTGACATTGTTTCACCGTATGTTCCCTCTAATGCTGACACCAAGTCCCTGGTAGTGAGAGCCCCTAACACTCTTCAATCTATTCCTGAAGCTCCCTATATGACTGCAAGGATCTTTCACTCTCAATTCACCTACACTTTCAATGTAACCCCAGGTCCCAAATTCATTCGTCTTCACTTCTACCCAGCTTCCTACATGGATCTCAACATTTCAAATGCTTTCTTATCAGTAAGTGCTGCTAACTTCACTCTTCTCCATAACTTCAGTGCTTCCCTCAACGCTGAGTACTACAACTTGGCCTATTTCAAGAAAGAATTCATTGTGCATGTAAGTGGAAGTGTTTTGCAACTCACTTTCTCCCCATCATATAATGCCTCTCGTGCCTTTGCATTTGTGAATGGGATTGAAGTTGTTTCAATGCCACTTAATTTATACATGAGGGGTGATGATGGTGATCCTCTTCCCTTAGTTGGACACGATAACAAAGTTGTGAACATTTATAATGACTCTGCCATGGAGACCTTGTACAGAGTGAAAGTAGGAGGTGAGCAAATCCCATCCAAATATGACACGGGCATGTTTCGGACTTGGGACACCGATGAAGTTTACATTTTTGGGGCTAGTTTTGGTATTCAACCCTGTAATATGAGCATGCTGGTTTTGTATTCAGATGATGCTCCACCATATTCAGCCCCAGCAGATGTCTACCGCACATCCCGCTCAATGGGACCTTCTGACTATGGACTTGTAAATTTAAATTACAATATGACATGGTTTTTTCCCGTTGATTCAGGTTTCCTTTATCTAGTTAGGCTTCACTTCTGTGAAATTGATCAAGATATAACAAAGATCAATCAGGTAGTTTTTACCGTGTTTTTAAATAATCAAACAGCTGAAGAAGAAGTCGATGTAATTGGTTTGGGGGCTGGGGAGCCCGGAGTTGCTGTACACAGAGATTATGTAGTGATGGTTCCCCATGTTAATGAGGGAAAGCAGGATTTGTGGCTTGATCTGCACCCATACAAGGATGCTAAACCTATGTACTATAATGCTTTCTTGAATGGTGTGGAGATCTTTAAACTCAGCAATTTTGATGATAAGAGTCTTGCAGGGCTCAACCCTCCCAAAAGCTTCTTTTCAGATGCAAAGGGTCCCCATGTTGCTCATTTTAATAGAAGTCCGAAGAAACTCAAATTCATCCTCATTGGATGTGGACTTCTTGCAGTGGTACTACCAATTTTCCTTTGCTTACTCTTATTCAGGTTAAAGGTGATTAGGCTTAGAAGGGTCGTGTCATGGTGCGGTCTCACTGTCCACGCACCTAGTCGAATTGAAAGGGCAAAAAAGTCGTCACTTTGCACTCAATTTTCGATGCGAGAGATAAAACTGGCGACAAATGACTTCCATGAGGCTTTACATATAGGCACTGGTGGATTTGGCAGTGTTTACAAGGGTAGTTTCGTTGGTGGCACAACTTACGTGGCCATTAAACGTGCCAATCCAATGTCAAAGCAAGGTGTTTCAGAATTCGAGACAGAGATCCTTTTGCTCTCACAACTTAGGCATCATAACGTGGTGTCACTTTTGGGTTATTGCAATGAGGATGGGGAGATGATATTGGTCTATGACTTCATGGCCAATGGAAGTCTTCATGATCATCTTCATTTGAGGCGGAGAGATCAACCCCCTTTGTCTTGGATTCAACGTCTTGAGATTTGCATTGGAGTTGCAAGGGGCTTGCACTACCTTCACACTGGCACAAAGCACAGGATCATCCACCGCGACATCAAGACAACCAACATACTCTTAGATCACAACTGGGTGCCCAAAATTTCAGATTTTGGGTTGTCAAAGGCAGGTTACCCTTCCTTAGTCACCACCAACGTGAAGGGTAGCATTGGTTACTTAGATCCCGAGTGCTATGAAAGCCTCAAGTTGTCTGAGAAATCTGATATATACTCACTTGGGGTGGTGTTATTGGAGGTTCTGACTGCAAGGCCTGCTGTAAGTGTAGGTGAAGATGATGAGCATGTTAACTTGGCCGAATGGACTATGTCGTGCCTTGAGAATGGCAATGTGGAGCAAATAGTTGACCCCAACTTGAAAGAAAACATAATTAAGGAGTGCTTTGAGTTATATTTAGGAGTTGCAATGAAATGTTTGGCTGAAAGAGGGGCGGAGAGGCCATCCATTGGTGAAGTGCTAGAGAATCTTGTTCTGGCAATGCATCTTCAGAAAAATGAAGGGAATGTCCCAAATGGAAATGAACGCAGAAGTGATAATGTTGTTCTGCAGGGTAATTCAGATTTGACACCTGGGGTTGAGTTCTCTGAAATCATGATGCCTATTGGTCGGTGA	2523	0.4269	MNAVICSGYIFILYLLNLQLVAVADNGSYVPTENIVLNCGSSTSEFVQYDGRNWSGDIVSPYVPSNADTKSLVVRAPNTLQSIPEAPYMTARIFHSQFTYTFNVTPGPKFIRLHFYPASYMDLNISNAFLSVSAANFTLLHNFSASLNAEYYNLAYFKKEFIVHVSGSVLQLTFSPSYNASRAFAFVNGIEVVSMPLNLYMRGDDGDPLPLVGHDNKVVNIYNDSAMETLYRVKVGGEQIPSKYDTGMFRTWDTDEVYIFGASFGIQPCNMSMLVLYSDDAPPYSAPADVYRTSRSMGPSDYGLVNLNYNMTWFFPVDSGFLYLVRLHFCEIDQDITKINQVVFTVFLNNQTAEEEVDVIGLGAGEPGVAVHRDYVVMVPHVNEGKQDLWLDLHPYKDAKPMYYNAFLNGVEIFKLSNFDDKSLAGLNPPKSFFSDAKGPHVAHFNRSPKKLKFILIGCGLLAVVLPIFLCLLLFRLKVIRLRRVVSWCGLTVHAPSRIERAKKSSLCTQFSMREIKLATNDFHEALHIGTGGFGSVYKGSFVGGTTYVAIKRANPMSKQGVSEFETEILLLSQLRHHNVVSLLGYCNEDGEMILVYDFMANGSLHDHLHLRRRDQPPLSWIQRLEICIGVARGLHYLHTGTKHRIIHRDIKTTNILLDHNWVPKISDFGLSKAGYPSLVTTNVKGSIGYLDPECYESLKLSEKSDIYSLGVVLLEVLTARPAVSVGEDDEHVNLAEWTMSCLENGNVEQIVDPNLKENIIKECFELYLGVAMKCLAERGAERPSIGEVLENLVLAMHLQKNEGNVPNGNERRSDNVVLQGNSDLTPGVEFSEIMMPIGR*	841

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g0400	840	PANTHER	FERONIA RECEPTOR-LIKE KINASE	24	840	-	-
	Pvu3g0400	840	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	646	658	IPR008271	GO:0004672\|GO:0006468
	Pvu3g0400	840	SMART	serkin_6	523	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu3g0400	840	Gene3D	Phosphorylase Kinase; domain 1	490	599	-	-
	Pvu3g0400	840	ProSitePatterns	Protein kinases ATP-binding region signature.	529	552	IPR017441	GO:0005524
	Pvu3g0400	840	ProSiteProfiles	Protein kinase domain profile.	523	795	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu3g0400	840	Gene3D	-	225	417	-	-
	Pvu3g0400	840	Gene3D	-	34	196	-	-
	Pvu3g0400	840	ProSitePatterns	Acetate and butyrate kinases family signature 1.	34	45	IPR023865	GO:0016301\|GO:0016310\|GO:0016774
	Pvu3g0400	840	Pfam	Malectin-like domain	37	415	IPR024788	-
	Pvu3g0400	840	SUPERFAMILY	Protein kinase-like (PK-like)	508	796	IPR011009	-
	Pvu3g0400	840	Pfam	Protein kinase domain	524	792	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu3g0400	840	PANTHER	OS07G0166700 PROTEIN	24	840	IPR045272	GO:0004714\|GO:0006468
	Pvu3g0400	840	CDD	STKc_IRAK	529	793	-	-
	Pvu3g0400	840	Gene3D	Transferase(Phosphotransferase) domain 1	600	816	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g0400	Pvu-Chr3	4059390	4061912	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g0400	20	840	Receptor kinase-like Gene Family	AT3G51550	47.534	0.0	736

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Pvu3g0400		Malectin_like	1.9e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g0400	-		-	gmx:100776859	1323.53