Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0375 ATGGGAAGATCTCCATGCTGTGAAGAAAGTGGTTTGAAGAAGGGTCCTTGGACACCTGAGGAAGATCAGAAGCTTGTTAACCACATTCAAAACTATGGTCATGCAAGCTGGAGGGCTCTTCCAAAACTTGCAGGACTCAACAGGTGTGGCAAAAGTTGCAGGTTAAGGTGGACGAACTACTTGAGACCTGACATTAAAAGAGGAAAGTTTTCCAAAGAAGAAGAACAAACAATTCTGGATCTCCATGCCATCCTTGGAAACAAATGGTCTGCAATAGCAAGTCACATACCTGGTAGGACAGATAATGAAATCAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACACCAGCCTCGAACTGATGATATCCTCTCAGGCTTGTCTCATCTCATAGCACTGGCAAACCTGAAAGAACTTTTGGACCATCACCATCAGCCATGGGAACAAAGCCTTGCAAGGCTTCAAGAAGAGACCATCCAATTAGCCAGGCTCCAAAGCCTACAGCAACACCTCTTGCAGCCACAAGCTTCATTCACCGAAGCTGATCTTAATACAGTTAATAGTATAAGAAACAGTACCATCATGATGAACAACGACACTGTCAATGTTTCAAATGATACTAGTGCTATGTCTTCTACCCCTTTCTCTTACATGCCTGAGTTGAAAACACCACCTTCTTGTTCCGTTGAAGCACCATTAAGTAATGAGAACATGGTTCAATTACAACAAGGAGAAAGTTACCCTAAATCTCCCTGGCTTTTCTCGTGTTCAAGCACTACCCCTTCTTCTCCTTCTTCCCATGTGGTTCCACCAGTGACGTTGGAGGTTTCATTGACTAATGTGGAAGATAATTGCATTAATTGGCCAGACATCCTGCTAGAGGACCCTTTGTTCAAAATGATTTCCTAG 939 0.4281 MGRSPCCEESGLKKGPWTPEEDQKLVNHIQNYGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEQTILDLHAILGNKWSAIASHIPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDDILSGLSHLIALANLKELLDHHHQPWEQSLARLQEETIQLARLQSLQQHLLQPQASFTEADLNTVNSIRNSTIMMNNDTVNVSNDTSAMSSTPFSYMPELKTPPSCSVEAPLSNENMVQLQQGESYPKSPWLFSCSSTTPSSPSSHVVPPVTLEVSLTNVEDNCINWPDILLEDPLFKMIS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0375 312 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 239 - -
Pvu3g0375 312 CDD SANT 69 112 IPR001005 -
Pvu3g0375 312 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pvu3g0375 312 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu3g0375 312 CDD SANT 16 61 IPR001005 -
Pvu3g0375 312 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Pvu3g0375 312 Gene3D - 69 116 - -
Pvu3g0375 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu3g0375 312 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pvu3g0375 312 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu3g0375 312 Gene3D - 11 67 - -
Pvu3g0375 312 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu3g0375 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu3g0375 312 SMART sant 66 114 IPR001005 -
Pvu3g0375 312 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0375 Pvu-Chr3 3662657 3664108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0375 1 311 MYB Transcription Factor Family AT5G10280 51.026 4.94e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0375 Myb_DNA-binding 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0375 K09422 - gmx:100785374 479.944