Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0349 ATGGAGAAAGATCACAACTATTCGGCACCAATATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACCACCTTTACCCACCAAATCAGCATCAGCAGCACCTCATGAAGTTCCAAGCTTCTGGTGATGAAAACAACAGTGGATCAATGGTGGATTACATGCCTCAAACACCACCACCACCACACGGTTTTTATGGCGGTTCTAGCACTGGCGCAATATCCTATGATAAGTTGAGTTTTGCAGACGTGATGCAGTTTGCAGATTTTGGACCTAAGCTGGCTTTGAATCAAACAAAAAGCTGCGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCAGTGTTGAACGACAAGATGGAGGAGGAGGAGAACCTGATGGTGAATGATGACCCTGATGGTGATGCAGAGAATCATGATGAGAGGTACAACTTGGTGGATGTGGAGGAGAAGTCAAGGGTTGATGAAGAGGGAATGATGATGAGAGAAGACGAAGAGACTCGGATTTCTGATGACAACAATTCCGTGCAGATTCGGTTTGTTGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAGCAAGAGCAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGTAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCACTCATGCCTGGTTCATATGTCCAAAGGGGTGATCAAGCCTCTATAATTGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTGCTTCAGTGTTTGGAGTCACAGAAGAGAAGGAGGCTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGACCCCTCCCTTGCACAACAACAACCTCCTTTCTTTCCACCATTGCCAATTCCAAATGAGCAGATGAAGCTTGTGGAGTTGGAGACTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCTTGTTTGGCTGATGTTGAAGTGAAGCTTCTGGGATTTGATGCCATGATCAAAATCCTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTTGAAGATCTGCAACTAATAATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCAGCGCAGAAGATATAGCAAGTTCGGTTCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1269 0.4484 MEKDHNYSAPISMPPSFNTLDYSLDHHLYPPNQHQQHLMKFQASGDENNSGSMVDYMPQTPPPPHGFYGGSSTGAISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLNDKMEEEENLMVNDDPDGDAENHDERYNLVDVEEKSRVDEEGMMMREDEETRISDDNNSVQIRFVGQEETQKNAGVQESKSKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQARQVGDPSLAQQQPPFFPPLPIPNEQMKLVELETGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFSAEDIASSVQQIFNFIHANTSM* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0349 422 Gene3D - 208 283 IPR036638 GO:0046983
Pvu3g0349 422 PANTHER TRANSCRIPTION FACTOR FAMA 35 422 - -
Pvu3g0349 422 CDD ACT_UUR-ACR-like 348 412 - -
Pvu3g0349 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 217 283 IPR036638 GO:0046983
Pvu3g0349 422 PANTHER TRANSCRIPTION FACTOR FAMA 35 422 IPR044283 GO:0003700|GO:0010052
Pvu3g0349 422 MobiDBLite consensus disorder prediction 195 219 - -
Pvu3g0349 422 Pfam Helix-loop-helix DNA-binding domain 218 269 IPR011598 GO:0046983
Pvu3g0349 422 MobiDBLite consensus disorder prediction 186 219 - -
Pvu3g0349 422 CDD bHLH_AtFAMA_like 220 287 - -
Pvu3g0349 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 268 IPR011598 GO:0046983
Pvu3g0349 422 SMART finulus 223 274 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0349 Pvu-Chr3 3333396 3336555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0349 43 422 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.277 2.14e-151 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0349 HLH 9.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0349 - - pvu:PHAVU_003G033900g 788.489