Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0347 ATGGCTTCCAAACCCCGCACAGTTGAAGAGATCTTCAGAGATTTCAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCACGACGTTGATGAATTTTACGGACTCTGTGATCCAGGTAAGGAAAACTTGTGCCTCTATGGACATCCAAACGGGGTCTGGGAGGTAGCTCTGCCATCGGAGGAAGTTCCACCAGAGCTCCCAGAGCCAGCTCTTGGAATCAACTTTGCCAGGGACGACCTGAGCCGCAAGGACTGGCTTTCTCTGGTTGCTGTGCATAGTGATTCATGGCTGCTTGCTGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAATGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACCGTTTTTCAAGTTGCAAGTGGCAATAAACCAATTAAGGAAAAACTCTCCTTGGATAGTGGAAGCAAATCTGGTGTAACCATCGAGGTAGCAATGAAAGGTGAGCATGCTAGAATATTTTGTGGAAGCTGTGGTGAAAAATACAATGGAGATGAACTTTGGATGGGGTGCGATATATGTGAGTGGTGGTACCATGGAAGGTGTGTTATGATCAACTCTGCAAAGGCTGACACCCTAAAACGGTATAAATGTCCATCATGCAGCTTGAGGAGGAGCAGATCATAG 660 0.4667 MASKPRTVEEIFRDFRARRNAIIRALTHDVDEFYGLCDPGKENLCLYGHPNGVWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVASGNKPIKEKLSLDSGSKSGVTIEVAMKGEHARIFCGSCGEKYNGDELWMGCDICEWWYHGRCVMINSAKADTLKRYKCPSCSLRRSRS* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0347 219 Pfam Alfin 7 131 IPR021998 GO:0006355|GO:0042393
Pvu3g0347 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 219 IPR013083 -
Pvu3g0347 219 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 159 218 - -
Pvu3g0347 219 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 2 151 - -
Pvu3g0347 219 SUPERFAMILY FYVE/PHD zinc finger 164 216 IPR011011 -
Pvu3g0347 219 ProSitePatterns Zinc finger PHD-type signature. 166 212 IPR019786 -
Pvu3g0347 219 ProSiteProfiles Zinc finger PHD-type profile. 163 215 IPR019787 -
Pvu3g0347 219 PANTHER CPG BINDING PROTEIN 2 151 IPR045104 GO:0006355|GO:0042393
Pvu3g0347 219 PANTHER CPG BINDING PROTEIN 159 218 IPR045104 GO:0006355|GO:0042393
Pvu3g0347 219 SMART PHD_3 165 213 IPR001965 -
Pvu3g0347 219 Pfam PHD-finger 165 213 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0347 Pvu-Chr3 3308799 3311476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0347 2 219 Alfin-like Transcription Factor Family AT5G05610 59.494 1.76e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu3g0347 Alfin 5.7e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0347 - - pvu:PHAVU_003G033700g 456.062