Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0344 CATTTCTGTAAGATTATCCTCAGACCAAACCTTGCACATGGAATACTTAATCTCCCAAAAATGTTCACTAGAAAACATGGAGATGGAATGTCAAATCCTGTGTTTCTTAGATCTCCTGATGGTACTGAATGGAAAATATACTGGGTCAGGAGTGATGGTGAGATTTGGTTTCAAAATGGATGGAAGGAGTTTGCCACATACTATTCTCTAGATCATGGCCATTTGCTGTTCTTTGAATACCAGGGAACTACTCATTTTCAAGTACACATATTTGACAATAGTGCCCTTGAAATAGACTATCCTTCCCACACTACTCATTGTAGAAAGGAAAATCTTGTCCACATTTCTGATGATTCTAATGAACTTTTGTTGGAGCAATTATCATGTCAAAATACTAGAGTGAAGCCAACTCTGTCTTCTCCCCAACCTTGTAAGAAAATGAAAAATAGCATAACTACAAATGTTGTGAGAAGCCCCAACTTGGTACATTTGCATCAGCATGTCCAAACTAAAAGTCCTAGCATTCAAGAGGAAAAATCTATAAAGCAAAAATTACATGAAGTTGAAGGTAAACACGCTTTTAACAGTGAATGCTCAAAAGTGGAGCAGTTAACATCTACGGCTTTAAAGAAAGCCATAACTTTCAGACCTGAACACCCCTTTTTCCTGCTTGTCATGAAGGAGTCATTGATTAAAAGATATTACCTGAAAATACCACCACATTTTGTAGAAAAATATTTGAAGAACACACGTGAAGTTGTCAACCTTGAGGTATTGGATGGGAGAACATGGCCTGTTATTTATTCTGCTCCTAGAATTAGTGGGGGATGGAAGAAATTTGCATCAGAAAACAATTTGAATGTGGGGGATGTTTGTGTTTTTGAGATGATCAAGAGGATCCAAGGCCTTGCTTTCATAGTTTCAATCTTTCGAGGTGCAGAGGAACCAAGTTTCCCCATTTCACAAGTCAAAGATTTTCAGTTGGAAAGTGACTTCAAGTCAAAGATCTTAACCAGAGCTCATAAAGAAGCTAGCAAATTCAAATCAGAAAATCCTTTTTTCATGGTTACTTTACCATCAAAGGAAAACACAACCAGATACCTGTGTGTGCCTATCTACTTTGCAAGGAAGTATCTTATAAAGTTTAATCAGAATGTGATGATGATACAGTTTAGAAACAAATTGTGGCCTGTGAAGTTTGTGTGTAATTCTTCATCTTCAGCTAAGTTCAGTGCTGGTTGGGCCTTATTTGCAAGAGAAAACAACCTGAAACCTGGAGATATTTGTGTCTTTGAGCTAGTCAATAGAAAAGATGCAACACTAGTTGTTCATGTTTTCAGAAGTCATGGTAATTAA 1356 0.3702 HFCKIILRPNLAHGILNLPKMFTRKHGDGMSNPVFLRSPDGTEWKIYWVRSDGEIWFQNGWKEFATYYSLDHGHLLFFEYQGTTHFQVHIFDNSALEIDYPSHTTHCRKENLVHISDDSNELLLEQLSCQNTRVKPTLSSPQPCKKMKNSITTNVVRSPNLVHLHQHVQTKSPSIQEEKSIKQKLHEVEGKHAFNSECSKVEQLTSTALKKAITFRPEHPFFLLVMKESLIKRYYLKIPPHFVEKYLKNTREVVNLEVLDGRTWPVIYSAPRISGGWKKFASENNLNVGDVCVFEMIKRIQGLAFIVSIFRGAEEPSFPISQVKDFQLESDFKSKILTRAHKEASKFKSENPFFMVTLPSKENTTRYLCVPIYFARKYLIKFNQNVMMIQFRNKLWPVKFVCNSSSSAKFSAGWALFARENNLKPGDICVFELVNRKDATLVVHVFRSHGN* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0344 451 SUPERFAMILY DNA-binding pseudobarrel domain 1 94 IPR015300 -
Pvu3g0344 451 SUPERFAMILY DNA-binding pseudobarrel domain 347 449 IPR015300 -
Pvu3g0344 451 Gene3D - 1 95 IPR015300 -
Pvu3g0344 451 SUPERFAMILY DNA-binding pseudobarrel domain 216 311 IPR015300 -
Pvu3g0344 451 CDD B3_DNA 1 92 IPR003340 GO:0003677
Pvu3g0344 451 ProSiteProfiles B3 DNA-binding domain profile. 221 313 IPR003340 GO:0003677
Pvu3g0344 451 CDD B3_DNA 220 311 IPR003340 GO:0003677
Pvu3g0344 451 ProSiteProfiles B3 DNA-binding domain profile. 1 94 IPR003340 GO:0003677
Pvu3g0344 451 ProSiteProfiles B3 DNA-binding domain profile. 353 449 IPR003340 GO:0003677
Pvu3g0344 451 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 338 448 - -
Pvu3g0344 451 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 311 - -
Pvu3g0344 451 SMART B3_2 353 449 IPR003340 GO:0003677
Pvu3g0344 451 SMART B3_2 2 94 IPR003340 GO:0003677
Pvu3g0344 451 SMART B3_2 221 313 IPR003340 GO:0003677
Pvu3g0344 451 CDD B3_DNA 353 447 IPR003340 GO:0003677
Pvu3g0344 451 Pfam B3 DNA binding domain 221 312 IPR003340 GO:0003677
Pvu3g0344 451 Pfam B3 DNA binding domain 9 93 IPR003340 GO:0003677
Pvu3g0344 451 Pfam B3 DNA binding domain 353 448 IPR003340 GO:0003677
Pvu3g0344 451 Gene3D - 201 314 IPR015300 -
Pvu3g0344 451 Gene3D - 334 449 IPR015300 -
Pvu3g0344 451 PANTHER B3 DOMAIN-CONTAINING 1 311 - -
Pvu3g0344 451 PANTHER B3 DOMAIN-CONTAINING 338 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0344 Pvu-Chr3 3288013 3290820 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0344 339 447 B3 DNA Binding Superfamily AT3G18990 41.818 4.88e-15 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu3g0344 B3 8.8e-17 CL0405