Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0325 CTCTCAGTCTCCGAGCTAAATATAGTTAAGGCAGATTTCTCTTTACAAGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTCGATTACCACAGAAGCTGCACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGTGCAGAACCAATTGAGTTAGAGTTTGTTTGGCAAGGTCGTGGTTACTTGCATGCTGAAAAAGCAATTGAAAAGGTAGAACAAATTGAATCAAATGCTGGTGCTAAGCCCGAGGTTCACGAATGGTCAAGATCCGGGTGGCATTCACATAGTAATGGTAGCATTCCTTGTCCAAAAGTCAACGACAAATGCAACCATGGTTTTCTGGAACTGAGAAGTATATTGGGTCAACATTTTATCTCTGAGTTAGTTTGCAAAGGGAAAGAACTTCTGCAAGCATACAAGATTCAAAATGTATTTAAGCCCTCTGACAGCTTCTGTTCATGTTTGGGGCTCGATAGAAACACAGATGTTAGGAATAGTAATATGAGGAAGGCTGCTTCTCGTGATAATTTGGCTGACAACTATTTATATTGTCCTAAGGCTGTAGATCTACAGGACAAGGATTTAAAGCATTTTCAGTGGCATTGGGAAAAGGGGGAGCCTGTCATTGTCAGCAATGTGCTTGAATGCACTTCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTACGTCATAAAACTAGTGCTTCCAAACGTGGTCAACATTTGGACGTGGAAACACTTGATTGCTTAGATTGGTGTGAGGGGGGAATCAATATCCACCAATTCTTTACTGGGTATACAGAAGGTCGAATGGATTGGCTTGGTTGGCCTCAGATATTGAAATTAAAAGATTGGCCTCCTTCTAATCTTTTTGAGGAACAGTTGCCTCGTCATTTTGTTGAGTTCATATCATCCTTACCCTTCAAGGAGTATACTGATCCTCTCATAGGTGCTCTTAACCTTTCTGTGAAGTTGCCTGATGATTGTCTAAAGCCAGACATGGGGCCAAAGTCTTATATTGCTTATGGATTTCCTCCGGAGCTTGGGCGTGGTGATTCTGTGACTAAGATCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAATTGAATTCTAAGCAACTTACTGCCATTGAGAAGTTGAAACAAAAGCATTTTGAGCAGGACAGAAGGGAGTTATTTGGTGATGATCATGGTGGAGAAACTAACACTGACATGCTTACTAATTCATCCTCTATCATAAATGCTTTGGACAACCAGAACAGTGTTCAAGTCATGGAACATGAAGGTGGATTATGTGATTTGAAAGAAGTTGACCACTTCCATCAATCTGGTTATAATGAGATTGCCACTGCTAAGGAGGATGGTCTTTTATGTGAATTAGAAGAAGTCAAAGAGGAAATAAAACTGGAAAATGGTTTGTTGTTTGGTGGTGATGCTTCAGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTATCTAAATTGCAAGAATATCTGAAGAAGCATTTCCGAGAGTTCAGGCATGTCCATTGCTGTCCTTTAAAGCAGGTTATTCACCCCATTCATGACCAGACTTTTTATCTTACCATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCGTGGACTTTTATTCAAAAGTTAGGAGATGCTGTTTTTATTCCTGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATCAAGGTTGCGTTGGATTTTGTGTCCCCTGAAAATGTTGGGGAGTGCTTTCGGTTGACAGAGGAATTTCGCACACTTCCAATAAATCACAAGTCCACAGAGGACAAATTGGAGTCCATAGAGGACAAATTGAAGGTATGGCAAACTAATTTTCTTGATTTGATTTTGGTATTTATTTGCTTCTCCATTTGTGATAAAGCATCTCTTGTTTTGTTGTTAGTCTTTAATGGGTTTGGAAATTAG 2022 0.406 LSVSELNIVKADFSLQERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRSGQLVGGAEPIELEFVWQGRGYLHAEKAIEKVEQIESNAGAKPEVHEWSRSGWHSHSNGSIPCPKVNDKCNHGFLELRSILGQHFISELVCKGKELLQAYKIQNVFKPSDSFCSCLGLDRNTDVRNSNMRKAASRDNLADNYLYCPKAVDLQDKDLKHFQWHWEKGEPVIVSNVLECTSGLSWEPLVMWRALRHKTSASKRGQHLDVETLDCLDWCEGGINIHQFFTGYTEGRMDWLGWPQILKLKDWPPSNLFEEQLPRHFVEFISSLPFKEYTDPLIGALNLSVKLPDDCLKPDMGPKSYIAYGFPPELGRGDSVTKIHCDMSDAVNVLTHIAEVKLNSKQLTAIEKLKQKHFEQDRRELFGDDHGGETNTDMLTNSSSIINALDNQNSVQVMEHEGGLCDLKEVDHFHQSGYNEIATAKEDGLLCELEEVKEEIKLENGLLFGGDASEGALWDIFRRQDVSKLQEYLKKHFREFRHVHCCPLKQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHKSTEDKLESIEDKLKVWQTNFLDLILVFICFSICDKASLVLLLVFNGFGN* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0325 673 ProSiteProfiles JmjC domain profile. 328 617 IPR003347 -
Pvu3g0325 673 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLASE 2, ISOFORM A 2 632 - -
Pvu3g0325 673 SMART cupin_9 309 617 IPR003347 -
Pvu3g0325 673 Coils Coil 623 643 - -
Pvu3g0325 673 Pfam JmjC domain, hydroxylase 504 600 IPR003347 -
Pvu3g0325 673 SUPERFAMILY Clavaminate synthase-like 206 631 - -
Pvu3g0325 673 Coils Coil 467 487 - -
Pvu3g0325 673 Gene3D Cupin 189 626 - -
Pvu3g0325 673 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 632 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0325 Pvu-Chr3 3033266 3039390 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pvu3g0325 JmjC 2.8e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0325 K15601 - gmx:100797799 1089.72