LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g0308	ATGAGTTGCAATGAGGAAACTTCTAATGGTAGTCTCAACATTAGGGCTTTAATGTGCAACGCTGCTGCTGGTGCCTCTGCTGGGGCAATAGCGGCTACATTTGTGTGCCCGTTGGATGTGATCAAGACTAGACTACAAGTCCATGGGCTTCCTCACGGGCAGAAAGGTAATGTTATTGTGACAAGCTTGCAAAATATAGTAAAGAAAGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATACTAGCGTTACTTCCAAACTGGGCAGTTTACTTCACAAGTTATGAGCAAGTAAAGGGCCTGCTTCGTTCACACGATGGTTGCCAGGAACTCACAACAATTGAAAATATGATAGCTGCTGCTTCTGCGGGTGCAGCAACAGCCATTTCTACAAATCCATTATGGGTTGTTAAGACAAGACTTCAAACACAAGGAATGAGGACTGATGTTGTTCCTTACAAGAGTGTTCTTTCTGCTCTGACAAGGATTACACGTGAGGAAGGCATTAGAGGCCTATATAGTGGCATTATTCCTTCATTGGCTGGCATAAGTCATGTTGCAATTCAGTTTCCAGCATATGAAAAGATGAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGGAGTGTTGCCATTGCATCATCAATTTCAAAAGTGTTTGCCTCTGTAATGACTTACCCACATGAGGTAATACGATCGAGGTTGCAAGAGCAAGGGCAGGCAAAAAATAATGTGATCAGATATGCAGGGGTTATTGACTGCACTAGGAAGGTGTTTGAAAAGGAAGGGATTCCAGGGTTTTATCGTGGTTGTGCAACGAATCTCTTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACGCAGGTTTTTGGAGGGAGTTGTACCCCAGGATAAGGGCTATCCACAAGCCTCTTCTAACTCCAATCAACTCAACAAAGACAAACCCAGTGCCACTGATCCATCTCAGTCTAACACGAAACCTTCTTCAATTCCTCTCGGAAACAAAGAGCACCTAACAAGACATTGA	1068	0.4316	MSCNEETSNGSLNIRALMCNAAAGASAGAIAATFVCPLDVIKTRLQVHGLPHGQKGNVIVTSLQNIVKKEGFRGMYRGLSPTILALLPNWAVYFTSYEQVKGLLRSHDGCQELTTIENMIAAASAGAATAISTNPLWVVKTRLQTQGMRTDVVPYKSVLSALTRITREEGIRGLYSGIIPSLAGISHVAIQFPAYEKMKSYMAEKDNTTVDKLSPGSVAIASSISKVFASVMTYPHEVIRSRLQEQGQAKNNVIRYAGVIDCTRKVFEKEGIPGFYRGCATNLLRTTPSAVITFTSYEMIRRFLEGVVPQDKGYPQASSNSNQLNKDKPSATDPSQSNTKPSSIPLGNKEHLTRH*	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g0308	355	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	3	312	IPR044712	GO:0006862\|GO:0055085
	Pvu3g0308	355	MobiDBLite	consensus disorder prediction	311	355	-	-
	Pvu3g0308	355	MobiDBLite	consensus disorder prediction	313	346	-	-
	Pvu3g0308	355	Gene3D	Mitochondrial carrier domain	4	109	IPR023395	-
	Pvu3g0308	355	Gene3D	Mitochondrial carrier domain	110	311	IPR023395	-
	Pvu3g0308	355	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Pvu3g0308	355	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Pvu3g0308	355	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Pvu3g0308	355	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Pvu3g0308	355	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Pvu3g0308	355	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Pvu3g0308	355	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Pvu3g0308	355	SUPERFAMILY	Mitochondrial carrier	18	299	IPR023395	-
	Pvu3g0308	355	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Pvu3g0308	355	Pfam	Mitochondrial carrier protein	213	304	IPR018108	-
	Pvu3g0308	355	Pfam	Mitochondrial carrier protein	19	106	IPR018108	-
	Pvu3g0308	355	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-
	Pvu3g0308	355	PANTHER	BNAA09G28490D PROTEIN	3	312	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g0308	Pvu-Chr3	2840399	2844911	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g0308	33	349	Chloroplast and Mitochondria Gene Families	AT1G25380	64.865	3.50e-146	416

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g0308	K15115		-	gmx:100816376	589.341