Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0288 ATGCTTCCCCTCAAAATGGGGTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGGAAAATTCAAGTTTTCCCCAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACACAAGCAATTGAGGGGTGTAGGCAGCAATTGTCTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAATGGCATCTCAAGATTCTGTTGAAGAAGAAGAAGAAGAAGAGAATGAGGATGAAGTTGAAGATGAACAACATTCTCATCAGCACAGAAAAACCACTTCTGATAAAAGGAAATCAGATTGGCTTAGATCTGTTCAGTTGTGGAATCCTAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAGAGTGGTGTAGTTGATGGAAAGGTTAATAATTATGCATCAGCAATTGGTAAAGCACCCTCTTCACCACCAGTGCCTGCTACAAGTTCCACAGGACCAGTGAGAATAGACAGCAAAAAAGAGGAGAAAGGACAGGCTCAGAGAAAGCAACGCCGGTGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCACTTCAGCAACTTGGAGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTCAAAAGCCATTTACAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATGCACAACAACGCAAGTTCACAAGCAGCCCCTTTGTTTCTTGTGGGGAACATTTTTGTGCAGCCACCAGAATATGGTGCAGTCGCTACCTCATCAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCAGTGGCTGCACACCCTCCACCTGTCACAAACACACCAATAATGAAGCATTTACATTCTCAAGAAAGGCCTCATAATCATCACAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCCACACACACCATCACCACTACTTCATGTGCCCCTTGA 1122 0.4501 MLPLKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLSGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKMASQDSVEEEEEEENEDEVEDEQHSHQHRKTTSDKRKSDWLRSVQLWNPNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSGVVDGKVNNYASAIGKAPSSPPVPATSSTGPVRIDSKKEEKGQAQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIMHNNASSQAAPLFLVGNIFVQPPEYGAVATSSASGGELTTVTAPTGIYAPVAAHPPPVTNTPIMKHLHSQERPHNHHSAQSNSPASSSSTHTITTTSCAP* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0288 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 269 IPR017930 -
Pvu3g0288 373 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Pvu3g0288 373 MobiDBLite consensus disorder prediction 178 215 - -
Pvu3g0288 373 Pfam Myb-like DNA-binding domain 214 263 IPR001005 -
Pvu3g0288 373 Gene3D - 211 269 - -
Pvu3g0288 373 MobiDBLite consensus disorder prediction 103 119 - -
Pvu3g0288 373 MobiDBLite consensus disorder prediction 342 373 - -
Pvu3g0288 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 368 IPR044787 GO:0003700|GO:0006355
Pvu3g0288 373 MobiDBLite consensus disorder prediction 349 373 - -
Pvu3g0288 373 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 5 368 - -
Pvu3g0288 373 MobiDBLite consensus disorder prediction 198 215 - -
Pvu3g0288 373 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 212 267 IPR006447 GO:0003677
Pvu3g0288 373 MobiDBLite consensus disorder prediction 84 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0288 Pvu-Chr3 2619872 2622387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0288 10 330 G2-like Transcription Factor Family AT1G68670 47.633 1.30e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu3g0288 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0288 - - gmx:100819750 563.148