Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0279 ATGGCTGGACCTTCGTGGTTGGTGGACAAAAGTAGGATTGCGACCAAAATAAAATGTGCATCAGGAACGTGTGATCCTAAGACGATTATATGGAACAGCAATCCTACCAAGCCTTGCCCAAATTGTCAACATGATATTGACAACAGTGATGTAGCACAAGAGTGGCCTGGCTTACCGAAAGGTGTCAAATTTGATCCATCTGATCAAGAGATAATCTGGCACTTGCTTGCAAAAGTCGGGGTAGAAGATTCTAAACCTCATCCTTTCATTGATGAATTTATTACTAATCTTGAAGAAGATAATGGAATTTGCTATACTCATCCTCAAAATTTACCTGGTATTATGCAAGATGGAAGTGCTTCCTACTTTTTCCATAGAGCAATCAAGGCTTACAACACTGGCAACCGAAAGCGTAGAAAAATAACAAGTCAAGATTTTGGTGATGCCCGCTGGCACAAGACTGGAAGGACTAAACCGATTGTCTTCAATGGGGCTCAAAAAGGCTGGAAAAAGATTATGGTTCTGTATGAAAACAACGGAAGAGGAGGAAAAGTTGAAAAAACTAATTGGGTTATGCATGAATATCACCTAGGAACAAAAGAAGATGAACATGATGGGGAGTACATTTTCTCTAAAGTGTTTTACCAACAACAAGTCAAATTGGGTGATAAAGATGACCAAGATGTTCCTGAAGCAATCGAATCAACAATTGTGGAGGTGGTTCCAAACACTCCCAACTTAGTGACTCTTGATGCTCTTTGCAATGAAAGGCAGAGTGCAGATCTAGACCAAGGACAAGAAACGCATGAAATTCCACAGCTGTCTCAGATGGATTGTTTATATGAAATTCAAGAGGATTACCAAGAACTTGCAACTGAATCTCAGCATAATGAAGGGGTGGATAATAAAGAAAGTAATGCTGAGGAAGGCCAAAAATGGTGGGACAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGATGCTCTGTCTTTGTGTGACGATCTCCTCCACAGCCAGTCTCCCAGTAGAGATGGAAAACATGAAGATCATAAGAACAATCCTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAATGTCTGAAGAAGGATATTGAAGAGTGTCAAAATCTTGTCAATGATCCTGCAAATATAGAGAATGATACCTCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGACAGCTTTATTTCCTGGGGATACAAGGCAGTGAACTAA 1251 0.4053 MAGPSWLVDKSRIATKIKCASGTCDPKTIIWNSNPTKPCPNCQHDIDNSDVAQEWPGLPKGVKFDPSDQEIIWHLLAKVGVEDSKPHPFIDEFITNLEEDNGICYTHPQNLPGIMQDGSASYFFHRAIKAYNTGNRKRRKITSQDFGDARWHKTGRTKPIVFNGAQKGWKKIMVLYENNGRGGKVEKTNWVMHEYHLGTKEDEHDGEYIFSKVFYQQQVKLGDKDDQDVPEAIESTIVEVVPNTPNLVTLDALCNERQSADLDQGQETHEIPQLSQMDCLYEIQEDYQELATESQHNEGVDNKESNAEEGQKWWDSESQNLLDSQQLVDALSLCDDLLHSQSPSRDGKHEDHKNNPGLSVYAQLGPECLKKDIEECQNLVNDPANIENDTSSEFRLSQLEFGSQDSFISWGYKAVN* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0279 416 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 411 - -
Pvu3g0279 416 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 411 IPR044799 GO:0003700
Pvu3g0279 416 MobiDBLite consensus disorder prediction 290 313 - -
Pvu3g0279 416 SUPERFAMILY NAC domain 44 216 IPR036093 GO:0003677|GO:0006355
Pvu3g0279 416 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Pvu3g0279 416 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Pvu3g0279 416 MobiDBLite consensus disorder prediction 339 359 - -
Pvu3g0279 416 MobiDBLite consensus disorder prediction 341 355 - -
Pvu3g0279 416 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Pvu3g0279 416 MobiDBLite consensus disorder prediction 290 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0279 Pvu-Chr3 2445510 2449836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0279 23 220 NAC Transcription Factor Family AT1G28470 53.431 3.91e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu3g0279 NAM 1.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0279 - - gmx:100799488 714.916