Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0223 ATGACCAAACCCAACTCTTTCTTTCACAATCTCATCAAGCCCTTCAAATTCACCTCGAGTAAAGAGGAACATAGCGAAGACGATATACAGAAGTTAGCTGAACAGGAGAACAAGATTTTCCCCTACGAAACATTGGTCGCTGCTACGAACAAATTTAGCATTCTTAACAAGCTTGGTGAGGGAGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTGAAGAGGTTATCACGTAGATCGAATCAAGGGAAAACGCAGTTCATCAACGAGGCCAGGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCGCCCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCCTCGCAAGAGCCTTGACAAGCTTCTCTTCAAATCGGGGAAGAAAGAAGAGCTAAACTGGAAACGTAGATTTGACATCATCAGTGGGGTGGGAAGGGGTTTGCTTTATCTTCACGAAGACTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTCGATGAAAAATGGGTGCCTAAGATAGCAGATTTTGGTCTCGCCCGACTCTTCCCCGAAGACCAAACCCATGTCAACACACGTGTGGCTGGAACCAACGGGTATTTGGCTCCAGAATATTTAATGCATGGCCATTTATCTGTGAAGGCAGACGTGTTTAGCTATGGAGTTTTGGTGTTGGAATTGGTCAGTGGCCAGAAAAATTCATCCTTTGATACGAACTTGAGTGCGCAGAATCTCCTCGACTGGGCATACAGGCTATACAAGAAAGGAAGGGCCATGGAAATGGTGGACCCTGCATTGGGGTCTTCAATCATAACTGAACAACTTGAAATGTGCATTAAACTGGGTCTCTTGTGCACTCAAGGTGATCCAAACCTCCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAACCAGACAACATGGAAGAACCAACAAGACCAGGAATGCCTGGTTCCAGATTCAGAAGAGTGCCTCGCAGACCCTCTGCAATGTTTTCTTCTGGGGTTGATGATGATTCTAATTCTAATTCACACACTTGTGATTCAAGCAACTATGGCACTAATAATAATACTACTTCTGCAACATCATCATCAACAACACCAAGCTCCACTGCTACTGCACAAGTAGATCCCCGAGGTAAACGACCAATGAAAGATTAG 1224 0.4551 MTKPNSFFHNLIKPFKFTSSKEEHSEDDIQKLAEQENKIFPYETLVAATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEARLLGRVQHRNVVNLIGYCAHASEKLLVYEYVPRKSLDKLLFKSGKKEELNWKRRFDIISGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWVPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMHGHLSVKADVFSYGVLVLELVSGQKNSSFDTNLSAQNLLDWAYRLYKKGRAMEMVDPALGSSIITEQLEMCIKLGLLCTQGDPNLRPTMGRVVVMLSKKPDNMEEPTRPGMPGSRFRRVPRRPSAMFSSGVDDDSNSNSHTCDSSNYGTNNNTTSATSSSTTPSSTATAQVDPRGKRPMKD* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0223 407 Pfam Protein kinase domain 53 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g0223 407 MobiDBLite consensus disorder prediction 355 397 - -
Pvu3g0223 407 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 375 - -
Pvu3g0223 407 Gene3D Transferase(Phosphotransferase) domain 1 128 334 - -
Pvu3g0223 407 PANTHER RECEPTOR-LIKE KINASE 3 375 - -
Pvu3g0223 407 CDD STKc_IRAK 58 324 - -
Pvu3g0223 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Pvu3g0223 407 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g0223 407 SUPERFAMILY Protein kinase-like (PK-like) 36 344 IPR011009 -
Pvu3g0223 407 ProSiteProfiles Protein kinase domain profile. 52 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu3g0223 407 Gene3D Phosphorylase Kinase; domain 1 14 127 - -
Pvu3g0223 407 MobiDBLite consensus disorder prediction 323 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0223 Pvu-Chr3 1910897 1915585 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0223 40 337 Receptor kinase-like Gene Family AT4G11530 52.667 1.25e-110 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pvu3g0223 Pkinase 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0223 - - gmx:100811523 639.032