Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0170 ATGGATCATCCAAATCCACCACACTCCACCACACCCAAACACGCTTCCGATTCGCTCCGCCGCGCCACTCCCTCCTCTAACCGTTTCCGCACACTCAGGGAGAGAGAAGGAACGGGTGAAGGGGAAAAGGAGGATCCGAGTGCCTCACGGAAGGTTCTGAAAGCTGACCGCGAGAAACTCAGAAGGGATCGACTCAACGAACACTTTCAGGAGTTGGGAAACACGTTAGATCCGGATAGACCCAAGAATGACAAGGCAACTATCCTTACTGAAACCGTCCAAATGCTAAAGGACTTAGCTGCTGAAGTTAGTAGGCTTAAAACTGAACATAAAGCACTTTCTGAAGAGTCACACGAACTAATGCAGGAAAAAAATGAACTCAGAGAAGAGAAGACATCTCTTAAATCTGATATAGAAAATCTCAATGCCCAGTATCAGCAGAGAGTGAGAATCATGTTCCCATCATGGAGTGCAATTGACCATTCTGTTGTCATTAATCCACCTTACTCTTATCCACTTCCTATACCTATCCCTCCTGCACCAATTTCGATCCACCCATCTCTTCAACCTTTTCCTTTCTTTGGAAATCAAAACCCTCATCACATTCCTAGTCCTTGTTCAATGTACGTCCCATATTCTACTCCATCTAATGCCCCAGTTGAGCCACCATCTGTGCTGTATGCTTCCACGTCCCATGTGTCCAACCAAAGGGAATCTTTTAGCAAGTCATCGGGTGATAGAAGGCCTAGTAGTGATGCTGAAAGATGTAGCAAATCTCACGATGTGGCCACAGAACTTGAACTCAAGATGCCTGGATCATCATCAACACAACAGGGTTGCACTTCTGGAGGAAGGAAGGGCAAGCATTCAGTGATAGAAGATAGAACCATCATAGGTGGCAGTGCTGGGAGTGCTTCAAGCCATTATTCTTCGTCTCAAGGACTTCAAGATAGCTCCAACAGTGTGGGTGACATTCCAAAGACTGATAACTGA 993 0.4602 MDHPNPPHSTTPKHASDSLRRATPSSNRFRTLREREGTGEGEKEDPSASRKVLKADREKLRRDRLNEHFQELGNTLDPDRPKNDKATILTETVQMLKDLAAEVSRLKTEHKALSEESHELMQEKNELREEKTSLKSDIENLNAQYQQRVRIMFPSWSAIDHSVVINPPYSYPLPIPIPPAPISIHPSLQPFPFFGNQNPHHIPSPCSMYVPYSTPSNAPVEPPSVLYASTSHVSNQRESFSKSSGDRRPSSDAERCSKSHDVATELELKMPGSSSTQQGCTSGGRKGKHSVIEDRTIIGGSAGSASSHYSSSQGLQDSSNSVGDIPKTDN* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0170 330 MobiDBLite consensus disorder prediction 300 330 - -
Pvu3g0170 330 MobiDBLite consensus disorder prediction 230 330 - -
Pvu3g0170 330 Coils Coil 89 144 - -
Pvu3g0170 330 SMART finulus 55 105 IPR011598 GO:0046983
Pvu3g0170 330 MobiDBLite consensus disorder prediction 9 26 - -
Pvu3g0170 330 PANTHER TRANSCRIPTION FACTOR BHLH11 27 329 - -
Pvu3g0170 330 Gene3D - 47 132 IPR036638 GO:0046983
Pvu3g0170 330 PANTHER TRANSCRIPTION FACTOR BHLH121 27 329 IPR044579 GO:0003700|GO:0055072
Pvu3g0170 330 MobiDBLite consensus disorder prediction 269 284 - -
Pvu3g0170 330 Pfam Helix-loop-helix DNA-binding domain 50 99 IPR011598 GO:0046983
Pvu3g0170 330 MobiDBLite consensus disorder prediction 241 265 - -
Pvu3g0170 330 MobiDBLite consensus disorder prediction 1 59 - -
Pvu3g0170 330 MobiDBLite consensus disorder prediction 27 59 - -
Pvu3g0170 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 120 IPR036638 GO:0046983
Pvu3g0170 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Pvu3g0170 330 CDD bHLH_AtILR3_like 54 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0170 Pvu-Chr3 1511238 1515308 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0170 38 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.250 3.33e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g0170 HLH 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0170 - - gmx:100818281 432.18