Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0139 ATGACTGTGGATGAAGTGGATAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCCTTGGCAACTCATCCGGAGGATGCCTCGGATCGATGGGAGAAGATTGCAGCTGACGTGCCAGGGAAGACTATAGAAGAAATCAAACAGCATTATGAACTCTTGGTTGAAGATGTTAGCCAGATTGAATCTGGTTGTGTGCCTTTACCATCTTATAATTCTTCTTCAGAGGGCTCAACAAGCCATGCTAGTGATGAAGGAGCAGGCAAAAAGGGCAGTGGTCTTGGGAATTACAACAGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAAGAAAGACGGAAGGGGATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTGGGCTTGGAAAAGTATGGGAAAGGTGACTGGAGAAGCATATCTAGAAACTTTGTGGTGACAAGAACACCTACACAAGTTGCAAGCCATGCCCAAAAGTACTTCATTCGATTAAACTCGATGAACAAAGATAGAAGGCGATCCAGCATACATGATATCACCAGCGTTAACAATGGTGATGTTTTAGCTCCACAAGGACCAATTACTGGTCAGACAAATGGTTCTGCTGCCAATTCTACTGCCAAAGCAACCAAACAAGGCACCCCGGCCTCAACCGGGGTGCCAGGAGTTGGAATATATGCTGCTCCTACCATTGGACAACCTGTAGGAGGACCCTTGGTATCTGCTGTCGGCACCCCGGTGAACCTTCCTTCACCTGCACACATGGCATACGGCGTCAGGGCCCCAGTTGCCGGTGCAGTTGTGCCTGGTGCACCAGTAAATGTGATCCCGGTGACGTATGCCATGCCACATACATCTGCTCCTCACAGGTGA 891 0.4781 MTVDEVDSSSEWSREQDKAFENALATHPEDASDRWEKIAADVPGKTIEEIKQHYELLVEDVSQIESGCVPLPSYNSSSEGSTSHASDEGAGKKGSGLGNYNSESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVLAPQGPITGQTNGSAANSTAKATKQGTPASTGVPGVGIYAAPTIGQPVGGPLVSAVGTPVNLPSPAHMAYGVRAPVAGAVVPGAPVNVIPVTYAMPHTSAPHR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0139 296 SMART sant 119 169 IPR001005 -
Pvu3g0139 296 SMART sant 8 60 IPR001005 -
Pvu3g0139 296 CDD SANT 11 58 IPR001005 -
Pvu3g0139 296 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Pvu3g0139 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 171 IPR017930 -
Pvu3g0139 296 MobiDBLite consensus disorder prediction 1 37 - -
Pvu3g0139 296 ProSiteProfiles SANT domain profile. 123 171 IPR017884 -
Pvu3g0139 296 MobiDBLite consensus disorder prediction 8 37 - -
Pvu3g0139 296 PANTHER TRANSCRIPTION FACTOR KUA1 7 283 - -
Pvu3g0139 296 Gene3D - 5 71 - -
Pvu3g0139 296 ProSiteProfiles Myb-like domain profile. 115 167 IPR001005 -
Pvu3g0139 296 MobiDBLite consensus disorder prediction 68 119 - -
Pvu3g0139 296 SUPERFAMILY Homeodomain-like 117 172 IPR009057 -
Pvu3g0139 296 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 283 - -
Pvu3g0139 296 CDD SANT 122 167 IPR001005 -
Pvu3g0139 296 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Pvu3g0139 296 Gene3D - 121 173 - -
Pvu3g0139 296 MobiDBLite consensus disorder prediction 68 85 - -
Pvu3g0139 296 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Pvu3g0139 296 Pfam Myb-like DNA-binding domain 122 167 IPR001005 -
Pvu3g0139 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 169 IPR006447 GO:0003677
Pvu3g0139 296 MobiDBLite consensus disorder prediction 188 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0139 Pvu-Chr3 1256403 1266451 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0139 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0139 - - ccaj:109792793 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0139 3 1256403 1266451 Pvu3g0139 3 1256403 1266451 ECH