Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0127 ATGAATTCTGTTCCTCAAGAACAACCAAGCTTAAATTTCAGACCCTCTTTTCTTCCCAAAACCGTCACTGATTTTCTCTGCCACCTTTCCTCCACCCCAAATGCCTCCCTCAACAAGTCCTTGCTGCAGGACTTTCTCAGCAGACTGGAACTCGAATTGCTCAAGATCCAACCCTTCAAACGCGAACTTCCTCTCTGCATGTTCCTCTTAAACGATGCAATTTCAGCTCTGAAGGTGGAGTTAGCGAAATGCAGAACTTTCAAGTCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAAAGAGGAAAGTGAGAAGGAAGAGAAATGCAGGGAGAAGAATGATTGGGGGAGTTCTTTCCAGCTTTGGAACAGTGATGATGATGAAGCTTGTAACAGGAGCAATGCATATAGATTGGAGCAGAAACCAAAGAAGATTAAGGGAGAAGAAAGAGAATCTGTGAAGAGGGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGATGAAGAATGTGTTGTGAGTGGACTTTCTCTTCAGACACCTGCAAGGGAGGGATGTGGTTCCAAAACCAGCAGGGTGGTTTCCTCCGCCACTTCTCCCCTGATGCTGCCTCAGAGTGGCCGGAAACAGAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGATTTGTCAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCTACTCCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGATGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCAACTTCTGTAGATCTTGGAGGCTTGTGGATGCAGAAAGAATCCTTGAAGGGGAGAAGTTCTGGTTCTCCTCAGGGCCCTCTCCAATTGGCTACACAATCAGGGGAAGCCACATCCACAACAGAAGGTGACAACATGGTAGATGATGATGTAAAATCGGACTTATAA 978 0.4632 MNSVPQEQPSLNFRPSFLPKTVTDFLCHLSSTPNASLNKSLLQDFLSRLELELLKIQPFKRELPLCMFLLNDAISALKVELAKCRTFKSEPVLEEFIPLKKEESEKEEKCREKNDWGSSFQLWNSDDDEACNRSNAYRLEQKPKKIKGEERESVKRGFVMPLSTYLATDEECVVSGLSLQTPAREGCGSKTSRVVSSATSPLMLPQSGRKQRRCWSPELHHRFVKALEELGGSQATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPAATSVDLGGLWMQKESLKGRSSGSPQGPLQLATQSGEATSTTEGDNMVDDDVKSDL* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0127 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 266 IPR017930 -
Pvu3g0127 325 MobiDBLite consensus disorder prediction 185 206 - -
Pvu3g0127 325 MobiDBLite consensus disorder prediction 286 325 - -
Pvu3g0127 325 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 264 IPR006447 GO:0003677
Pvu3g0127 325 Gene3D - 207 268 - -
Pvu3g0127 325 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Pvu3g0127 325 PANTHER TRANSCRIPTION FACTOR HHO6 9 323 - -
Pvu3g0127 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 323 IPR044787 GO:0003700|GO:0006355
Pvu3g0127 325 MobiDBLite consensus disorder prediction 286 314 - -
Pvu3g0127 325 MobiDBLite consensus disorder prediction 185 209 - -
Pvu3g0127 325 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0127 Pvu-Chr3 1152130 1155053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0127 42 284 G2-like Transcription Factor Family AT2G03500 40.690 6.84e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu3g0127 Myb_DNA-binding 2.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0127 - - pvu:PHAVU_003G012400g 642.884