Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0116 ATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCACCACTATTCAATCCAGACAACTGAGGATTCCGGATACTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAATTGCTACCCTCACTGTTCCTGATGGTAGTATCTGGCGAATAGGATTGAAGAAAGCAGACAACAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTTCAAAGGTACTCCGTTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCGTCCTTCATTGTTCATATTTTTAATTTGAGTACCGCTGAGTTAAATTACCAATCAGCCATAAGAAACCATATCGAAGGACCCTGCTATGCCAATTACAATCATATTTTCGAGGAAATGGAAGACGTAGACTCCATTGATTTGTCGGATTTGTCACCTGCGTACCTTGCATCTGGTGCCATGCAAAACAAAGGTTTTGCAGGATCTGGAGATCAACTAACACCTGGGAAGAGCCATACTCCAGCTCTGCAGAATTTGTTCAACGGCGGATCAAAACTCAATCGCGTAAACTGGGGTGATGGCGGGAGTGCTTATTCTTCCAAGGCTGCAAATTCACAAGGCACCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTCGAGTTTAAAAGGTCCACCGAAGAATTAAAATTGCGCTATTCTAATGAAGAATCAGTTAACAAAACGGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGTGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGTTATAGGTTTTATGAAAGTGCATCTGCTAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATCAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTGTACAGAGGATGCATAATGTACTTGCCTTCATGCTTTGCAGAGAAGAATCTTAATGGGGTATCAGGTTTCATTAAACTTCAATTGTCCAATGGCCGACAGTGGTCCGTTCGCTGTCTCTACCGAGGAGGTCGAGCCAAGTTAAGCCAGGGATGGTTCGAATTCACGGTGGAGAACAATCTGGGGGAAGGTGATGTCTGTGTGTTCGAGCTCCTTAGAACGAAGGAAGTTGAGCTGCAAGTTACAGTTTTTCGGGTAACTGAGGATGCAGGGTTGTTGCACACTCCTCTTGCTGTGCAGCAGCAGAGCCAAAATATGAGCCACACCAAGCTCTTGAACCCTCATTTGCAGCATCGTGTAAGCAGTACAGTGAAACTGATTAGAAATTAG 1308 0.4404 MARPCFHKLVLSTTIQSRQLRIPDTFLRKYGTQLSTIATLTVPDGSIWRIGLKKADNKIWFVDGWQDFVQRYSVGVGYFLVFMYEGNSSFIVHIFNLSTAELNYQSAIRNHIEGPCYANYNHIFEEMEDVDSIDLSDLSPAYLASGAMQNKGFAGSGDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSAYSSKAANSQGTQSTRDIGVQFNAVEFKRSTEELKLRYSNEESVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVELQVTVFRVTEDAGLLHTPLAVQQQSQNMSHTKLLNPHLQHRVSSTVKLIRN* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0116 435 CDD B3_DNA 296 391 IPR003340 GO:0003677
Pvu3g0116 435 Gene3D - 1 99 IPR015300 -
Pvu3g0116 435 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Pvu3g0116 435 Pfam B3 DNA binding domain 301 392 IPR003340 GO:0003677
Pvu3g0116 435 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Pvu3g0116 435 MobiDBLite consensus disorder prediction 228 260 - -
Pvu3g0116 435 SMART B3_2 298 393 IPR003340 GO:0003677
Pvu3g0116 435 SMART B3_2 6 98 IPR003340 GO:0003677
Pvu3g0116 435 MobiDBLite consensus disorder prediction 228 250 - -
Pvu3g0116 435 Gene3D - 275 395 IPR015300 -
Pvu3g0116 435 SUPERFAMILY DNA-binding pseudobarrel domain 291 392 IPR015300 -
Pvu3g0116 435 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 424 - -
Pvu3g0116 435 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Pvu3g0116 435 MobiDBLite consensus disorder prediction 154 173 - -
Pvu3g0116 435 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pvu3g0116 435 PANTHER B3 DOMAIN-CONTAINING 1 424 - -
Pvu3g0116 435 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0116 Pvu-Chr3 1046578 1051766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0116 1 397 B3 DNA Binding Superfamily AT3G18990 50.245 3.17e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu3g0116 B3 2.5e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0116 - - gmx:100789352 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0116 3 1046578 1051766 Pvu3g0116 3 1046578 1051766 ECH