Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0094 ATGGCGGAGCATCTGGCATCGATCTTCGGGACGGAGAAGGACCGCGTCAACTGTCCCTTCTACTTCAAGATCGGCTCCTGCCGCCACGGCGACCGGTGCTCGCGGTTGCACAACCGGCCAAGCATCTCGCCCACGCTGCTGCTGTCGAACATGTACCAGCGCCCCGACATGATCACGCCCGGCGTGGATCCGCAGGGGCAGCCCCTGGACCCGCGCAAGATCCAGCAGCACTTCGAGGACTTCTACGAGGACATCTTCACGGAGCTCGCAAAGTTCGGTGAGATCGAGAGCCTCAATGTCTGCGACAATCTCGCCGACCACATGATCGGCAACGTCAAGGCCCTTCACGCGCTCCACGGACGGTTCTACAACGCCCGCCCCATCATCGCTGATTTCTCTCCCGTCACCGACTTCCGCGAGGCCACGTGTCGGCAGTTTGAGGAGAACAGCTGTAACCGCGGCGGGTATTGCAACTTCATGCACGTCAAGCTCATCGGAAGAGACCTCCGTCGGAGGCTCTTCGGCCGCAATCACCGCGGCGGTGGAGGCTACTACCACATCAACCAGAGCCGGAGCCGCAGTCGCAGTCGCAGCAGGAGTCCAAGGCACCGCCGGGAGAGACGGGAGAGGGACTCCCACAGCGGCGGGAGGCGGGATTATAGAGAGAGGGACGGCGGTGGACGGCGGAGGCACGCCGAGAGTCCCGCCAGGGAAGGTAGCGAGGAGCGCCGCGCGAGGATCGAGCAGTGGAATCGGGAGAGGGAGGTGAAGGAGTGA 777 0.6358 MAEHLASIFGTEKDRVNCPFYFKIGSCRHGDRCSRLHNRPSISPTLLLSNMYQRPDMITPGVDPQGQPLDPRKIQQHFEDFYEDIFTELAKFGEIESLNVCDNLADHMIGNVKALHALHGRFYNARPIIADFSPVTDFREATCRQFEENSCNRGGYCNFMHVKLIGRDLRRRLFGRNHRGGGGYYHINQSRSRSRSRSRSPRHRRERRERDSHSGGRRDYRERDGGGRRRHAESPAREGSEERRARIEQWNREREVKE* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0094 258 SUPERFAMILY RNA-binding domain, RBD 32 143 IPR035979 GO:0003676
Pvu3g0094 258 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Pvu3g0094 258 SMART c3hfinal6 137 163 IPR000571 GO:0046872
Pvu3g0094 258 MobiDBLite consensus disorder prediction 205 258 - -
Pvu3g0094 258 MobiDBLite consensus disorder prediction 180 258 - -
Pvu3g0094 258 Gene3D - 43 134 IPR012677 -
Pvu3g0094 258 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 257 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu3g0094 258 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Pvu3g0094 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 162 IPR000571 GO:0046872
Pvu3g0094 258 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Pvu3g0094 258 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu3g0094 258 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu3g0094 258 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu3g0094 258 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu3g0094 258 PRINTS U2 auxiliary factor small subunit signature 154 166 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pvu3g0094 258 ProSiteProfiles Zinc finger C3H1-type profile. 137 164 IPR000571 GO:0046872
Pvu3g0094 258 PANTHER SPLICING FACTOR U2AF SMALL SUBUNIT A 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0094 Pvu-Chr3 904447 908755 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu3g0094 zf-CCCH 7.1e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0094 K12836 - gmx:100799606 408.297