Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0091 ATGGAGAAGGTGGCTGCGCCTCCGATTCTCATGCCGCGGAAGCGCGATCTGCCGTACGGCGTCGTCGCGGGGAGTCCCGGCGAGAGTTGGAAGTGGGACTGGGACAGCGTGCGCTTCGCCGGGAAGCCTCCCGCCGATGACGTCGTGTTCGAGGAGGAGAGCGTGGCGGCGGCGGCGGCTCCTCTGCAGCTCAACCTCGCCGGGAGAGTCGGCGGGAACAAGAGAGTGCGCTCGGGGTCGCCCGGGGCCGCGACGTATCCGATGTGTCAGGTGGATAACTGCAGGGAGGATCTGTCGAAGGCGAAGGACTATCACCGGCGGCACAAGGTGTGCGAGGCGCATAGCAAAGCCTCCAAGGCGCTTCTCGCCAACCAAATGCAAAGGTTTTGCCAGCAGTGCAGTAGGTTTCATCCGCTGTCCGAGTTTGACGAGGGGAAGCGGAGCTGCCGCCGGAGACTTGCCGGACACAACCGCCGCCGGAGGAAAACGCAGCCGGAGGATGTTACTTCCGCCACGCCGGCCCCCGCCGCCGCTGCAGCGAATTTGGAAATCTTCAACTTGTTGACTGCAATAGCCGGAGCTTCCCAGGGAAAATTTGAAGAAAGAAGATCACAAGTTCCGGATAGAGAGCAGCTTGTTCAGATTCTCAATAGGATACCTTTGCCTGCGGATCTTGCAACCAAGTTGCTGGATGCTGGTAATGTCAACGGGAAAAAAGATCATGTACAATCGCAGACACCATCCTCCTATCATCATCATGACCAACTGAACCACACCCCGGCAGCCCCATTAACTATGGACTTACTTGCTGTTCTTTCCACCACCCTGTCTGGGTCTGGCCCTGATGCCAATGCGTCCCCCTCTCAAAATAGAAGCTGCAGCAGTGATGGCGGTAGTGTTAAGTCTAGGAGCTGTGCTGATCAGACGAGACAACAGCACTTCTTTTCAGTTGGCGGAGAAAGAAGCAGTAGCAGTTCCCAGTCTCCAGTTGAAGATTCAGACTGCCAGGAGGATGTTAGAGTTAATTTACCGCTGCAACTCTTTAGCTCCTCCCCAGAAGAGGACAGCTTGCCTAAACTAGCATCTTCAAGAAAGTATTTCTCGTCTGACAGTAGTAACCCTGCAGAAGAGAGGTCACCATCATCTTCTCCTCCTTCTCCTCCTGTTGTGGAGATGCAGTTTGATTTGCAGGGTGGTGCTAGAGGTCTAAAGCCGGAGAGCATCTCCTCTGGAAGAGGAGTTAATTCAAACAAGGAAACTAGCCAAAGTCATAGTTGTAATATCTCTCTCGATCTATTTAAAGGGTCAAATAACAGGATCCAACAACCTAGTTGGCTTCAAAGCGTTCCATTTCAAGCTGGCTATACATCTTCAGGCTCTGATCATTCACCTCCCAGTTTGAATTCAGATGCTCAGGATCACACTGGTAGAATAATGTTTAAACTATTTGACAGGCATCCTAGCCATTTCCCAGCAACATTGCGAGCACAGATTTACAGTTGGCTTTCTAATAGGCCATCAGACATGGAGAGCTACATACGGCCTGGTTGTGTGGTCCTATCACTTTATGCTTCAATGTCTTCTGCTGCCTGGGAGAAACTAGAGGAAAACTTCCTCCAACATGTTCATTCTTTAATTCAAAACTCAGATTCTGACTTTTGGAGAAATGGAAGGTTTCTAGTACATTCTGGCAGTCAATTAGCTTCACACAAAGATGGGAAGGTACGCATATGCAAACCATGGAGAACATGGAAGTCGCCAGAGTTGATATCTGTGTCCCCTCTGGCAATTGTTAGTGGACAGGAAACCTCTATTTCATTGAAGGGTAGAAACCTGTCAACTCCAGGCACAAAGATCCACTGTACGGGTACTGGGTCTTACTCATCAGCAGAAGTCATCAGATCTTCATATCCTGGTGTGATGTATGATAAGATAAAGTTAAGTGGTTTTAAAGTTCAGGATGTTTCACCTGGTGTTGTAGGTCGCTTTTTTATTGAGATTGAAAATGGTTTCAAGGGTAACAGTTTTCCAGTGATAATAGCTGATGAGACCATTTGCAAGGAACTGAGATCACTTGAGTCTGAATTTGACGAGGAGGAAAAAATGTGTGATGCTATTTCAGAGGATCATGAACATCATTTTGGAAGGCCAAGATCAAGGGAGGAGGCTTTGCATTTTTTGAATGAGCTTGGCTGGCTGTTCCAAAGAGAAAGATTCTCATATGTGCATGAGGTTCCATCTTATTCTCTTGACAGGTTCAAATTTATACTCACATTTGCTGTGGAAAGAAACTGTTGCATGTTAGTCAAAACCCTTCTCGATGTGCTGGTTGATAAACACATGCAAGGGGAATGGTTGTCAACAGGACCAGTGGAGATGTTGAATGCATCCCAACTCTTAAATAGAGCAGTGAAAAGAAAGTACACAGGCATGGTTGATTTGCTCATCCACTATTCTATACCGAACAAAAATAGTACATCCAGAAAATATGTATTTCCTCCTAATCTTGAGGGTCCTGCTGGTATCACACCCTTGCACTTGGCAGCATGCACGTCTGGTTCTGAGAGTGTAGTTGACTCTTTAATAAGTGACCCACAGGAGATTGGCTTGCTATGCTGGGACATCCTTGTGGATGCTAATGGGCAGACTCCACATGCCTATGCTATGATGAGGAATAATAACTCTTATAATGCGCTGGCTGACCGTAAACGTGCTGCTAGACGAAGGCCAGAAATTTCAGTAACAATTGAGAAGGAGATAGCGCAATCCTCTCTAAGACTGGAGCTTCAGCAAGAGCAAAGTAACCTAGTCAAACGAGGTCAGAGTTCTTGTGCCAAGTGTATGACTGCAGAAATTCGCTACAACAGGAGAATTTCAGGTTCACAGGCTATGCTTCACCGCCCCTTTATTTATTCAATGCTAGCCGTTGCTGCAGTTTGTGTATGTGTTTGTGTTTTCTTCCGTGGACGCCCATATGTAGGCTCAGTTGCTCGCTTCAGTTGGGAAACCCTGGATTATGGCACAATGTAA 3030 0.4789 MEKVAAPPILMPRKRDLPYGVVAGSPGESWKWDWDSVRFAGKPPADDVVFEEESVAAAAAPLQLNLAGRVGGNKRVRSGSPGAATYPMCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSATPAPAAAAANLEIFNLLTAIAGASQGKFEERRSQVPDREQLVQILNRIPLPADLATKLLDAGNVNGKKDHVQSQTPSSYHHHDQLNHTPAAPLTMDLLAVLSTTLSGSGPDANASPSQNRSCSSDGGSVKSRSCADQTRQQHFFSVGGERSSSSSQSPVEDSDCQEDVRVNLPLQLFSSSPEEDSLPKLASSRKYFSSDSSNPAEERSPSSSPPSPPVVEMQFDLQGGARGLKPESISSGRGVNSNKETSQSHSCNISLDLFKGSNNRIQQPSWLQSVPFQAGYTSSGSDHSPPSLNSDAQDHTGRIMFKLFDRHPSHFPATLRAQIYSWLSNRPSDMESYIRPGCVVLSLYASMSSAAWEKLEENFLQHVHSLIQNSDSDFWRNGRFLVHSGSQLASHKDGKVRICKPWRTWKSPELISVSPLAIVSGQETSISLKGRNLSTPGTKIHCTGTGSYSSAEVIRSSYPGVMYDKIKLSGFKVQDVSPGVVGRFFIEIENGFKGNSFPVIIADETICKELRSLESEFDEEEKMCDAISEDHEHHFGRPRSREEALHFLNELGWLFQRERFSYVHEVPSYSLDRFKFILTFAVERNCCMLVKTLLDVLVDKHMQGEWLSTGPVEMLNASQLLNRAVKRKYTGMVDLLIHYSIPNKNSTSRKYVFPPNLEGPAGITPLHLAACTSGSESVVDSLISDPQEIGLLCWDILVDANGQTPHAYAMMRNNNSYNALADRKRAARRRPEISVTIEKEIAQSSLRLELQQEQSNLVKRGQSSCAKCMTAEIRYNRRISGSQAMLHRPFIYSMLAVAAVCVCVCVFFRGRPYVGSVARFSWETLDYGTM* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0091 1009 SUPERFAMILY Ankyrin repeat 756 894 IPR036770 -
Pvu3g0091 1009 Coils Coil 689 709 - -
Pvu3g0091 1009 MobiDBLite consensus disorder prediction 343 379 - -
Pvu3g0091 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 1009 IPR044817 GO:0003677
Pvu3g0091 1009 MobiDBLite consensus disorder prediction 277 332 - -
Pvu3g0091 1009 Gene3D - 80 150 IPR036893 GO:0003677|GO:0005634
Pvu3g0091 1009 Gene3D - 750 931 IPR036770 -
Pvu3g0091 1009 MobiDBLite consensus disorder prediction 236 258 - -
Pvu3g0091 1009 MobiDBLite consensus disorder prediction 277 422 - -
Pvu3g0091 1009 Pfam SBP domain 89 162 IPR004333 GO:0003677
Pvu3g0091 1009 MobiDBLite consensus disorder prediction 152 174 - -
Pvu3g0091 1009 ProSiteProfiles Zinc finger SBP-type profile. 86 163 IPR004333 GO:0003677
Pvu3g0091 1009 SUPERFAMILY SBT domain 87 167 IPR036893 GO:0003677|GO:0005634
Pvu3g0091 1009 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 14 30 1009 - -
Pvu3g0091 1009 MobiDBLite consensus disorder prediction 238 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0091 Pvu-Chr3 868116 874101 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0091 3 1009 SBP-box Gene Family AT1G20980 52.354 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pvu3g0091 SBP 1.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0091 - - gmx:100812180 1660.97