Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0087 ATGGGTAGCTGTGGAAGGGAAGGTGTAGTGAGACAGTATATAAGGTCAAAAGTCCCTCGTTTAAGATGGACCCCTGAACTGCATCGTTGCTTTGTTTATGCCATTGAAACTCTCGGAGGTCATCACAAGGCTACTCCTAAGCTTGTTCTTCAATTGATGGATGTTAAAGGGCTCACAATTTCCCATGTAAAGAGCCATCTGCAGATGTACAGAAGCATGAAAGGTGATTCCTGCAGACAAGTGACAGACAAGACTTCCACCCAACATAGAAAACAATCTTTTCAGGAGCATGATGATGAAGAGGGTGATGTTGGTTTTCACTCTTGCTTAAAATCCATTGGAAAAGAATCTGATTCCCAGTCCAGTTGCAGTAATTTCTCCCTAAAAAGAGCTAGAATCGAGAAGACAAGTTTATTCTCAGGATTCCCACATTGCAGCCAAAGAATATGTGAAGCAGTCCCAAATCCATACACTACTTTTTATGATTACCTGCAGAGCATGGCTGAGCAGAAGGGAATAAAGAAGATTTGTGCTGGTTCAATATTGCAGACTCAACCTCTTTCCACAACCTTTCTTCCCATGCTACCAAGCCAAGAATCAGATTTGCTCCAGGTTGCACACTTAAATGATAAACAGCCTTTGAATGAAGCTGAGAACAGTTGCAGGGTACAATCAGAGGATGAAAACATGGGAGGTTGTGAGTTGTCACTGTCCATCTCATTGCCACAACCACATCCTTCTTCACAGAAAAGTAATGCTTCTTCAGTCAGCAGCATCAGTGAGGCCTTTTCATTATGTCCTAAGTTTAACACCACCAACAACAACAACTACATGGGCTGTTCTAGTTCTTCTAATGTTCCAAACACAGTTAATGTGGACCTATCTTTGGCCATTTGA 897 0.4203 MGSCGREGVVRQYIRSKVPRLRWTPELHRCFVYAIETLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMKGDSCRQVTDKTSTQHRKQSFQEHDDEEGDVGFHSCLKSIGKESDSQSSCSNFSLKRARIEKTSLFSGFPHCSQRICEAVPNPYTTFYDYLQSMAEQKGIKKICAGSILQTQPLSTTFLPMLPSQESDLLQVAHLNDKQPLNEAENSCRVQSEDENMGGCELSLSISLPQPHPSSQKSNASSVSSISEAFSLCPKFNTTNNNNYMGCSSSSNVPNTVNVDLSLAI* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0087 298 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Pvu3g0087 298 Gene3D - 18 74 - -
Pvu3g0087 298 Coils Coil 298 298 - -
Pvu3g0087 298 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 196 298 - -
Pvu3g0087 298 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 170 - -
Pvu3g0087 298 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Pvu3g0087 298 MobiDBLite consensus disorder prediction 83 102 - -
Pvu3g0087 298 MobiDBLite consensus disorder prediction 78 102 - -
Pvu3g0087 298 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Pvu3g0087 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Pvu3g0087 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 196 298 IPR044848 GO:0003700
Pvu3g0087 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 170 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0087 Pvu-Chr3 827236 832438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0087 1 74 G2-like Transcription Factor Family AT1G14600 70.886 8.06e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu3g0087 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0087 - - pvu:PHAVU_003G008400g 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0087 3 827236 832438 Pvu3g0087 3 827236 832438 ECH