Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0086 ATGGCAGCACCTTTTTCTGCAGCATCTCTCTTTGGAATCAGAGAAGAGGATCAGAATCAGATGAAGCAGCAGCATTCCTCAACCACAACACCATCATCCTCATCAACTCCAGCTGCACCACCACCCCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCTGAGGTGATAGCACTATCTCCAAAGACTCTAATGGCAACAAACAGGTTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGCAATAAAGAGGCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATCAAGAAGCACTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCTTTTTGTGATGCATTTGCACAAGAAAGTGCAAGAGAGCCACCCAATTTGAGCAGTGCCATTGGCAACCAACTCTATGGGAACAGTAACATGTCCTTAGGCTTATCTCAGATCCCTTCAATCCATGACCAAAACTCCCAATCCAGTGACCTATTGCGTTTTGGTGGTGCACCAAGAACTGGTCAATTTGACCACATTCTCCCACCAAACATGCCCTCACCCTTCAGACCCTCCTCACACCAAACCATGCAAATGCAAAACCCTCCATTCTTCATTCAAGAACCAAACCAAAACCAAAACCAGAACTACCATGATCACCAACAAGGCTTAATCTCAAACAAGCCATTCCAAGGAATGATACAACTATCTGACCTCAACAACAACACCCCTTCTAACCTCTTCAACCTCCCCTTTCTCTCCAACCGAAACCACACCCCCAACTACTCCGAGGAGCACCACTTCACCACCACTGAACCCTCAAATTTCTTCACAGAAGGCACCATGATCGAAACAAGCTCCGCCACCGCCCCTTCTCTCTTCAGCACCTCTCTTCAGAGCAGCACCAACATGTCTCACATGTCAGCAACTGCACTGCTCCAAAAAGCTGCTCAAATGGGTGCTGCGAGTTCCAGCAACAACAACAACAGTGCCTCCTCTCTCCTAAGAAGCTTGGCATCCAAATCTGAGCACAGGCCACTGATCAGTGCTGCGAACTACAGCAGCATCCTGAACTCCAGCGTGCAGGAGATGATGAACCTTCCCGGGTTCGAAGCATACGATCATGCCATGAACAAGGAGCCAAAACTGAGCGTTGGAGGGTCTAATAGACTCACAAGGGATTTTCTAGGAGTTGCACAGCAGCAACAACAACAACGAGGGTTTAACTTGAGTTCCTTGGAATCAGAGACAAACAATGCTGCGCTGTCAGGTCAATCTTTCGGAGGTGGAGGGAACTTTCAGTGA 1545 0.4777 MAAPFSAASLFGIREEDQNQMKQQHSSTTTPSSSSTPAAPPPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDAFAQESAREPPNLSSAIGNQLYGNSNMSLGLSQIPSIHDQNSQSSDLLRFGGAPRTGQFDHILPPNMPSPFRPSSHQTMQMQNPPFFIQEPNQNQNQNYHDHQQGLISNKPFQGMIQLSDLNNNTPSNLFNLPFLSNRNHTPNYSEEHHFTTTEPSNFFTEGTMIETSSATAPSLFSTSLQSSTNMSHMSATALLQKAAQMGAASSSNNNNSASSLLRSLASKSEHRPLISAANYSSILNSSVQEMMNLPGFEAYDHAMNKEPKLSVGGSNRLTRDFLGVAQQQQQQRGFNLSSLESETNNAALSGQSFGGGGNFQ* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0086 514 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 442 - -
Pvu3g0086 514 SMART c2h2final6 73 95 IPR013087 -
Pvu3g0086 514 SMART c2h2final6 149 169 IPR013087 -
Pvu3g0086 514 SMART c2h2final6 114 144 IPR013087 -
Pvu3g0086 514 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Pvu3g0086 514 Gene3D Classic Zinc Finger 52 122 - -
Pvu3g0086 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Pvu3g0086 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 442 - -
Pvu3g0086 514 MobiDBLite consensus disorder prediction 1 58 - -
Pvu3g0086 514 Gene3D Classic Zinc Finger 127 206 - -
Pvu3g0086 514 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Pvu3g0086 514 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Pvu3g0086 514 MobiDBLite consensus disorder prediction 234 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0086 Pvu-Chr3 801525 809030 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0086 10 487 IDZ Gene Family AT2G02070 49.177 1.75e-134 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g0086 zf-C2H2_jaz 3.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0086 K25870 - gmx:100818072 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0086 3 801525 809030 Pvu3g0086 3 801525 809030 ECH