Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0084 ATGGCTTCTGCTTCCTCATCAACACCCTTCTTGGGAATCAGACAAGAAAACCAAACTCAGGTGTCACAACAGCACCAATCCTCCACAGCTGCTTCCTCAACTACTACTTCTACCACCACAGTGCCTCAGAAGAAAAGAAGGAATCAACCAGGAACACCATATCCAGATGCTGAGGTGATAGCACTATCTCCAAAGACTCTAATGGCAACAAACAGGTTCATATGTGAAGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAATCTGCCATGGAAGCTGAAGCAGAAGAGCAATAAAGAGGCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGAGACCTCACTGGCATCAAGAAGCACTTCTCTCGCAAACATGGTGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCAGATTGGAAGGCACACTCCAAAACCTGTGGCACCAGAGAGTATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTTATCACTCATAGGGCCTTTTGTGATGCTCTAGCACATGAGAGTGCAAGACACCCTTCCAACCTGAACCCTTTGGGAACTCATCATCTGTATGGCACAAACCACATGAGCCTAGGGCTAGGTGGCCAACTTCAGAACCAAGCAGCCTCTGCTAACAGCTTATTGAGCCTTGGGAGTGCACCAAAGTTTGAGCACTTGATCTCTCCTAATATGCACAACTCATCTTCATTTGGAGTGCAGTCACCACCCCAGTCATCATTCTTCATGACTGACCCAAACCAAGCATTCCAAGACCTCCACTCTCAGCAACAAGGATCCTTATTCTCAACCAAGCAACTCCACGGTCTCATGCAACTCCCTGATCTCCAAGCAAAAGATGCTTCATCAGTGTCTGCTTCAGCTAATAACACCAATCTCTTCAACCTCAGCTTCTTTCCCAATACCAACACCAGTGGCAGCATGATCAACGACCAATTCAGCAACATAAGTGGAGGAAATGACCAAGGAACAACAACAACACTCTATAGTACTAGCAGCCCTAACCATGTTGGTTCACTCTTTGGCAATTCATCTATGCAACAAGATAACATGTCCCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCACAACCACCAATGCTCCCTCCTCTCTACTGAGAGGAACAGGAACAGAGGAATTAGGTATGAGGGCAAGGATGGAGAGGGAGCAGAATAACCATCTGCGTGGGTTGATGAACTCTTTTGCCAATGGAAACAACCTTGGCCAGTTTCACAACGTGGTGGAGGAGCCTAAGAAGATGTCACAAAATCTTGGTCTCTGCTTTGGAGGGTCTGATAAGTTGACCTTGGACTTTTTGGGGGTTGGAGGGATGGTCAGAAACATGAACAGTGGTGGGTTTTCACAACAGCACTCCATGGGAACTATCACCCCCTTGGATCCTAAATTGGAATCACCACAACCAAACCAACACTTTGGCTCCTCAACACTCTAA 1581 0.4681 MASASSSTPFLGIRQENQTQVSQQHQSSTAASSTTTSTTTVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEAKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHESARHPSNLNPLGTHHLYGTNHMSLGLGGQLQNQAASANSLLSLGSAPKFEHLISPNMHNSSSFGVQSPPQSSFFMTDPNQAFQDLHSQQQGSLFSTKQLHGLMQLPDLQAKDASSVSASANNTNLFNLSFFPNTNTSGSMINDQFSNISGGNDQGTTTTLYSTSSPNHVGSLFGNSSMQQDNMSPHMSATALLQKAAQMGSTTTTNAPSSLLRGTGTEELGMRARMEREQNNHLRGLMNSFANGNNLGQFHNVVEEPKKMSQNLGLCFGGSDKLTLDFLGVGGMVRNMNSGGFSQQHSMGTITPLDPKLESPQPNQHFGSSTL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0084 526 Gene3D Classic Zinc Finger 127 206 - -
Pvu3g0084 526 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 498 - -
Pvu3g0084 526 Pfam Zinc-finger double-stranded RNA-binding 73 95 IPR022755 -
Pvu3g0084 526 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Pvu3g0084 526 MobiDBLite consensus disorder prediction 1 57 - -
Pvu3g0084 526 SMART c2h2final6 73 95 IPR013087 -
Pvu3g0084 526 SMART c2h2final6 149 169 IPR013087 -
Pvu3g0084 526 SMART c2h2final6 114 144 IPR013087 -
Pvu3g0084 526 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Pvu3g0084 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Pvu3g0084 526 MobiDBLite consensus disorder prediction 1 47 - -
Pvu3g0084 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 498 - -
Pvu3g0084 526 MobiDBLite consensus disorder prediction 494 526 - -
Pvu3g0084 526 Gene3D Classic Zinc Finger 56 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0084 Pvu-Chr3 791057 795813 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0084 68 522 C2H2 Transcription Factor Family AT2G02080 47.934 6.48e-125 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g0084 zf-C2H2_jaz 3.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0084 K25870 - gmx:100806198 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0084 3 791057 795813 Pvu3g0084 3 791057 795813 ECH