Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0083 ATGAAACCTGAGTTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCGCGCGTCCTCAAGCGACCTCGCACTTCGTCTGCTCCATCTCCTCCACCGATCGAGTCCTTCGCCTACACCTCTAAGGTCGACGTTTTAAGCGAAAACGATAGCGATTGCGTCGAAATCGCGCCGAACGACGCCAATTTCCTCGACGACCTCGAGGACGCCGACGTGGACAACGGCGTCGGCGGTTACGCGGCGGCCTCGCGAGGCCGGAGATTCATCATCGACGACGAAGACGAGGACGCGGAAGAGAACGGCGGAGGAGACGGACGCGTGGCGGAGTTGTACGAGGTGGAGTCCAGCGAGGTGGAAGAAGAAGAAGAAGAAGTTGAAGAGTTGAACGAAAACGATGTCGTCGGTAGGGCTTTGCATAAGTGCGCGCGAATCTCTGCGGAGTTGAAGGGCGAACTGTTCGGCTCGTCGGGGACCGCGTGCGAGAGGTATTCGGAGGCGGAGTCTTCGTCAGTGAGGATCGTGACTCAGGAGGATGTGGATGTTGCGTGCGCGTCGGAGGATTCGGATTTTCAGCCATTGCTAAAGCCGTATCAGTTGGTTGGTGTCAACTTTTTGCTTCTGTTGTATCGGAAGGGGATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGCAAAACAATTCAGGCCATCACATATTTAACTTTGTTGAATCGCTTGCACAATGATTCTGGTCCACATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAAAGGTGGTGTCCGCACTTTTCTGTTCTGCAATATCATGGTGCTGGACGTGCAGCATACTGCAAGGAGTTGAACTCTCTGTCCAAGGCTGGATTGCCTCCTCCATTTAATGTTCTTCTCGTGTGTTATTCACTTTTTGAACGTCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGATGGAGATGGAGCTGTGTGTTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCACGAAATGCGAACCAACGCTTGATGTTGACTGGGACACCACTTCAAAATGATCTACATGAGTTATGGTCATTGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACCTAAAAAAGTTACTAAATGCAGAAGATAGAGATTTAATTGGTCGCATGAAGTCCATCTTAGGGCCATTTATTTTGCGGCGATTGAAATCTGATGTGATGCAACAACTTGTTCCAAAAATACAGCAGGTTGAATATGTTATAATGGAAAGGCAGCAGGAATCTGCTTACAAGGATGCCATTGAAGAGTATCGTGCGGTTTCACAAGCTCGGATGGCAAAATGTTCTGAGCTTAATTCAAAAAGTTTACTAGAAGTGCTTCCTCGACGACAGATAAATAACTATTTCGTTCAGTTCCGCAAGATAGCAAATCACCCCTTGTTAATAAGGCGAATCTACAGTGATGAGGATGTCATTCGCTTTGGTAGGAAGCTACATCCAGTAGGTGCTTTTGGTTTTGAATGTACTTTGGACAGAGTTATAGAAGAACTTAAAAATTACAGTGACTTCTCTATTCATCGGCTTTTACTTCATTATGGTGTCAATGATAAAAAGGGTATCCTTCCGGATAAGCATGTTATGCTTTCTGCAAAATGTCGGGCCTTATCAAAGCTTCTTCCTTCACTAAAGAAGGATGGCCATCGAATCTTAATCTTCAGTCAATGGACCTCAATGCTTGACATATTGGAGTGGTGTTTGGATGTCATTGGATTGACCTATAGACGGCTTGATGGAAGTACACAGGTAGCGGAGAGGCAAACAATAGTTGATACGTTCAATAACGATACTTCAATATTTGCATGCTTACTTTCCACGAGAGCTGGTGGACAGGGCTTAAACTTAACAGGAGCTGATACAGTTGTAATTCATGACATGGATTTTAACCCACAGATTGATAGGCAAGCTGAAGATCGTTGCCATCGAATCGGTCAAACAAAGCCTGTAACCATATATCGGCTAGTGACGAAGGGAACAGTAGATGAAAATGTGTATGAGATTGCAAAAAGAAAGTTAGTATTAGACGCTGCCGTCCTCGAGTCCATGGAGGAGATTAATGAAGGTGCCATGCCCGAGAAGACCATGGGAGAGATATTGTCTGCTATTTTATTAAGTTAA 2244 0.4545 MKPELYEISDDEWENHSFKPSRVLKRPRTSSAPSPPPIESFAYTSKVDVLSENDSDCVEIAPNDANFLDDLEDADVDNGVGGYAAASRGRRFIIDDEDEDAEENGGGDGRVAELYEVESSEVEEEEEEVEELNENDVVGRALHKCARISAELKGELFGSSGTACERYSEAESSSVRIVTQEDVDVACASEDSDFQPLLKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTIQAITYLTLLNRLHNDSGPHLIVCPASVLENWERELKRWCPHFSVLQYHGAGRAAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWRWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFASEDVDLKKLLNAEDRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQQVEYVIMERQQESAYKDAIEEYRAVSQARMAKCSELNSKSLLEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFGRKLHPVGAFGFECTLDRVIEELKNYSDFSIHRLLLHYGVNDKKGILPDKHVMLSAKCRALSKLLPSLKKDGHRILIFSQWTSMLDILEWCLDVIGLTYRRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESMEEINEGAMPEKTMGEILSAILLS* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0083 747 Pfam Helicase conserved C-terminal domain 574 686 IPR001650 -
Pvu3g0083 747 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A CONTAINING DEAD/H BOX 1 75 745 - -
Pvu3g0083 747 Gene3D - 167 412 IPR038718 -
Pvu3g0083 747 Gene3D - 435 744 IPR027417 -
Pvu3g0083 747 MobiDBLite consensus disorder prediction 19 40 - -
Pvu3g0083 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 728 IPR027417 -
Pvu3g0083 747 SMART helicmild6 603 686 IPR001650 -
Pvu3g0083 747 PANTHER SNF2/RAD54 HELICASE FAMILY 75 745 - -
Pvu3g0083 747 Coils Coil 112 135 - -
Pvu3g0083 747 SMART ultradead3 194 399 IPR014001 -
Pvu3g0083 747 CDD DEXHc_Snf 198 391 - -
Pvu3g0083 747 Pfam SNF2-related domain 218 504 IPR000330 GO:0005524|GO:0140658
Pvu3g0083 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 424 IPR027417 -
Pvu3g0083 747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 577 744 IPR001650 -
Pvu3g0083 747 CDD SF2_C_SNF 564 697 - -
Pvu3g0083 747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 389 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0083 Pvu-Chr3 749580 758817 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0083 219 725 RAD5 or RAD16-like Gene Family AT5G22750 26.806 5.89e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu3g0083 SNF2_N 4.3e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0083 K14439 - gmx:100806323 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g0083 3 749580 758817 Pvu3g0083 3 749580 758817 ECH