Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0080 ATGAACTCTCTCTTTTCGCCAGAAAACCTTCCTCCACCGCCGGGAATCCCAATCCCCGCCTCTATCGCCGCCGCCACAGCCACCACCAGCGCCTCCCCAGCCCCAACAATAACCCCAAAGCTCGAACCTTTCGACGGATGGTTCAACACCCACACTTCCCAAGAACAACAACAATCCCAGGACCCCAATTTTTCAAATGGGTCCCTCGACCTCGACCTCAATCTCTTGTGCGACGGAACCTCCGAAGACCCGAACTTGTTCTCCGAGTTCAACAGAATCTCCCAGCTTTTCTGCACGGCGTTCTCCGCCAACGACCCCCAGAACGATGCCGTTCCCGACCCCATCACCGAAGGCCTGCAACAGCTCCGGAACGACGCCTTTTCCGACCCTTTTGCGGAAAACCCGCAGCACTTCCAAAACGGAGTCGTTTCGGGGACCGGGCTGCAGCAGACCCCAAAGGGCACCTCTCCGGACCCGGATTCGCGGGCAATTGTGCCTGTCCCGGAGGAGGAGCGGTCCTCTTCGATGACGGCCTCAACCACGCCGCGGCGGCGGTGTAAGGAGTTAGTTCGGGTGGCGGATCTAGGCGCGCCGGAGCAGCGGCACTTCCGGGACGTTGTCCGGCGGACCAGGAAGGTGTATGACGCGCTGCGCGTGCTGGCGACTGTGGAGGACGAGCGGCGGGTGGACTCCCGCAGGGGGCGCAGCGATTTACGAGCCTCGGCCGTGATGAGGAGCTGTGGTTTGTGGTTGAATCGTGACAAGAGAATCGTTGGTTCAATTCCTGGTGTTTGCGTTGGTGATGTGTTCCTCTATAGGATGGAGTTGTGCGTGGTTGGGTTACATGGTCATCCTCAGGCTGGCATCGATTATCTTCCTGGCAGCATGAGTTCGAACGGTGAACCAATTGCCACGAGTGTGATTGTCTCTGGTGGGTACGAGGATGATGTTGACGAGGGTGATGTCATCACTTACTCTGGGCATGGTGGCCAGGACAAGCATTCTAGGCAGGTTTGTCACCAGAAGCTTGAGGGAGGGAACCTTGCAATGGAGCGGAGTAAGCACTATGGGATTGAGGTGAGGGTGATTCGCGGTGTGCGCTATGAGGGTGCCGCCTCTGCCACCGGGAAGTTGTATGTCTATGATGGCCTTTATACGATTATAGATTGCTGGTTTGATGTTGGGAAGTCGGGTTTCGGAGTTTTTAAGTATAAGCTGTGTCGGATCGATGGGCAAGCTAAGATGGGGAGCATGATCATGAAGGAGGCGCATATGCTTAAGAAGGATCCCTTGAGTATCAAACCCATGTGTTGTGTTTCGCTTGATATTTCAAACAGGGTCGAGAATGTTGGGGTTCGCCTTTTCAATGATCTCGATCGCAATTTCGACCCTCTCAGGTATGAGTATCTTGTGAAGACAAACTTTCCTCAGATGGTGTTTCACCAGAGTGGGAGGGGTACGGGTTGTGATTGTGTAGACGGGTGTGTTGAAGGGTGTTTTTGTGCCATGAAGAATGGAGGGGAGTTTCCCTATAATCAGAGTGGGGTTCTCTTGAGAGGGAAGCCTTTGGTTTTTGAGTGTGGCCCCTTTTGTCACTGCCCTCCTCATTGTCGGAATCGGGTCACACAGAAGGGGATCAAGAATAGGTTGGAGGTGTTTAGATCCAGGGAAACTGGTTGGGGAGTTAGGTCCTTGGACCTTATTCAAGCCGGTGGTTTTATATGTGAGTACACGGGGGTTGTGCTCACTAGGGACCAAGCAGAAATTTTGTCCATGAATGGTGATTCCTTGATATATCCGAATCGGTTCACTGCTAGGTGGGCGGAATGGGGTGACTTATCTATGATTGACTCCAATTATGTGCGTCCATCTTATCCTTCAATCCCTCCTTTGGATTTTGCTTTGGATGTGTCAAGAATGAGGAATGTTGCCTGCTATGTGAGTCATAGTTCCACTCCCAATGTGTTGGTTCAGTTTGTCCTGTATGATCACAATAATTTGATGTTCCCTCACCTTATGCTGTTTGCAATGGAGAACATCCCTCCCATGAGAGAGCTCAGCCTTGATTATGGGGTACCTGACGAGTTTTCAGGAAAACTCTCTATAAGTAACTGA 2115 0.5248 MNSLFSPENLPPPPGIPIPASIAAATATTSASPAPTITPKLEPFDGWFNTHTSQEQQQSQDPNFSNGSLDLDLNLLCDGTSEDPNLFSEFNRISQLFCTAFSANDPQNDAVPDPITEGLQQLRNDAFSDPFAENPQHFQNGVVSGTGLQQTPKGTSPDPDSRAIVPVPEEERSSSMTASTTPRRRCKELVRVADLGAPEQRHFRDVVRRTRKVYDALRVLATVEDERRVDSRRGRSDLRASAVMRSCGLWLNRDKRIVGSIPGVCVGDVFLYRMELCVVGLHGHPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVITYSGHGGQDKHSRQVCHQKLEGGNLAMERSKHYGIEVRVIRGVRYEGAASATGKLYVYDGLYTIIDCWFDVGKSGFGVFKYKLCRIDGQAKMGSMIMKEAHMLKKDPLSIKPMCCVSLDISNRVENVGVRLFNDLDRNFDPLRYEYLVKTNFPQMVFHQSGRGTGCDCVDGCVEGCFCAMKNGGEFPYNQSGVLLRGKPLVFECGPFCHCPPHCRNRVTQKGIKNRLEVFRSRETGWGVRSLDLIQAGGFICEYTGVVLTRDQAEILSMNGDSLIYPNRFTARWAEWGDLSMIDSNYVRPSYPSIPPLDFALDVSRMRNVACYVSHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVPDEFSGKLSISN* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0080 704 Pfam SET domain 559 691 IPR001214 GO:0005515
Pvu3g0080 704 MobiDBLite consensus disorder prediction 134 183 - -
Pvu3g0080 704 Pfam SAD/SRA domain 258 412 IPR003105 -
Pvu3g0080 704 SUPERFAMILY PUA domain-like 240 422 IPR015947 -
Pvu3g0080 704 SUPERFAMILY SET domain 432 692 IPR046341 -
Pvu3g0080 704 SMART G9a_1 254 412 IPR003105 -
Pvu3g0080 704 Gene3D SET domain 417 703 IPR046341 -
Pvu3g0080 704 MobiDBLite consensus disorder prediction 134 157 - -
Pvu3g0080 704 ProSiteProfiles Pre-SET domain profile. 487 545 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu3g0080 704 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 102 703 IPR025794 GO:0016571
Pvu3g0080 704 ProSiteProfiles YDG domain profile. 259 408 IPR003105 -
Pvu3g0080 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 32 701 - -
Pvu3g0080 704 Gene3D - 256 416 IPR036987 -
Pvu3g0080 704 ProSiteProfiles SET domain profile. 548 691 IPR001214 GO:0005515
Pvu3g0080 704 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 32 701 - -
Pvu3g0080 704 Pfam Pre-SET motif 443 540 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu3g0080 704 SMART preset_2 440 532 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Pvu3g0080 704 SMART set_7 548 697 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0080 Pvu-Chr3 723359 730009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0080 204 692 Su(var)3-9 homologs AT5G04940 38.477 1.08e-99 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pvu3g0080 SAD_SRA 8.3e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0080 K11420 - gmx:100795514 1153.27