Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0079 ATGTCTTCTCAATGTCAAGGAGTGCAATTTTTGAAGGTTATTGTGGAAAGCATCCTTCAAAGTGGAACAATGAAAGTTCCTACCAGTTTTGTGAGTAGACATTGGCAAGGAATGCCAAATCCTGTCATTCTAAGCCTTCCAAATGGCAGCAAGAGCAAAGTTTTTTGGCTGAATCAAGATGGTGGTGTTTGGTTTTGCTATGGTTGGAAAGAGTTTGCAAAATACTCCAAGTTGGATGTGTCACATTCTATAGTGTTTCGATATGAAGGAAATTCTTGCTTCAACGTGATTATTTTTGGAGAAAGTGGTTTAGAAATAGAATACCCTTTAAGCAGGGATGCTACTAATGAAGAAGTGGGAGAAATTGATGAAGCTAGTTATTTCTGTGCAAACCTTAGTGAAGAACGAAGTAAGAGGCCAAGAGAAGAAGCACAAGAAGAAGAAGAAGAAAAATCTAATAGGCAAAAGACATGTTCTGATTATTCCAAGCACAAGAACAGTGGTACTAGTAGTAATGGCCAAGAAGATTTCAGGACGAAACTCAGAATGCTTCGTGAGAAGGTGGAGGAAATGTTCAACTATAACCCTAACCATTTCACATGTGTTATCAAAGAAAAACATACTGAGAGAGATCTTCTGGTCATGCCAGCGGAATTTGCCAAACCATATCTACACAAGGAAGGAACTGCTACACTTTTTGTTGAACATGGCAGAACTTGGAAGGTCGAGACAGAGGCTAATTCCCATAAACAATTAGAAGTTGTCTTTGGGTGGAGGGAATTTTTGTTGGATAATAAATTGAAACTTGGTGATATTTGTGCTTTTGAGGTATTAGACAGGGAACTGCTTTTATTCAAGGTTACTATATGTCGTCTAGAATAG 882 0.3821 MSSQCQGVQFLKVIVESILQSGTMKVPTSFVSRHWQGMPNPVILSLPNGSKSKVFWLNQDGGVWFCYGWKEFAKYSKLDVSHSIVFRYEGNSCFNVIIFGESGLEIEYPLSRDATNEEVGEIDEASYFCANLSEERSKRPREEAQEEEEEKSNRQKTCSDYSKHKNSGTSSNGQEDFRTKLRMLREKVEEMFNYNPNHFTCVIKEKHTERDLLVMPAEFAKPYLHKEGTATLFVEHGRTWKVETEANSHKQLEVVFGWREFLLDNKLKLGDICAFEVLDRELLLFKVTICRLE* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0079 293 MobiDBLite consensus disorder prediction 134 161 - -
Pvu3g0079 293 MobiDBLite consensus disorder prediction 134 176 - -
Pvu3g0079 293 SUPERFAMILY DNA-binding pseudobarrel domain 192 291 IPR015300 -
Pvu3g0079 293 Pfam B3 DNA binding domain 12 99 IPR003340 GO:0003677
Pvu3g0079 293 Pfam B3 DNA binding domain 200 291 IPR003340 GO:0003677
Pvu3g0079 293 Gene3D - 179 293 IPR015300 -
Pvu3g0079 293 Gene3D - 3 103 IPR015300 -
Pvu3g0079 293 CDD B3_DNA 10 99 IPR003340 GO:0003677
Pvu3g0079 293 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Pvu3g0079 293 PANTHER B3 DOMAIN-CONTAINING 4 291 - -
Pvu3g0079 293 SMART B3_2 198 293 IPR003340 GO:0003677
Pvu3g0079 293 SMART B3_2 10 102 IPR003340 GO:0003677
Pvu3g0079 293 ProSiteProfiles B3 DNA-binding domain profile. 198 293 IPR003340 GO:0003677
Pvu3g0079 293 MobiDBLite consensus disorder prediction 162 176 - -
Pvu3g0079 293 SUPERFAMILY DNA-binding pseudobarrel domain 5 102 IPR015300 -
Pvu3g0079 293 CDD B3_DNA 213 291 IPR003340 GO:0003677
Pvu3g0079 293 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0079 Pvu-Chr3 718869 721814 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0079 10 292 B3 DNA Binding Superfamily AT3G18990 25.749 1.30e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu3g0079 B3 7.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0079 - - pvu:PHAVU_003G007600g 589.726