Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0078 ATGTCTTCTCAATATCACGGAGTGCATTTTTTCAAGGTTATTGTGGAAAGCACACTTCAAAGGGGAATAATGAAAATACCTACTAGTTTTGTGAGAAGACATTGGGAAGGAATGTCAAATCCTGTGATTCTAAGTCTTCCAAATGGCAGCAAGAGCAAAGTTTTTTGGCAGAATAAAGATGGTGGTGTTTGGTTTTGCAATGGTTGGAAAGAGTTTGCAAAATACTCCAAGTTGGATGTGTCACATTTTATAGTGTTTCGATATGAAGGAAATTCTTGCTTTAACGTTATTATTTTTGGAAAAAGTGCTTTAGAAATAGAATACCCTTTAAGCAGGGATGCTACTAATGAAGAAGTGGAAGAAATTGATGAAGGTTCTGATTTTTCTCTAAAATTTAGTGAAGAACGAAGTAAGAGGCCAAGAGAAGAAGCACAAGAAGAAGAAGAAGAATCACCTAATAAGCATAAGAAGAGAGCATGTTCTGATTATTCCAAGCACAAGAACACTGGTAGTAGTAGGGCAAGTGAACATTGCAAAGGAGATTTCAAGAAGAAACTGAGAATGTTTCACAAGAAGGTGAAGGAAATGTTCAAGTCTAACCATAAGCATTTTACATGTATTATCCGAAAAACATACACTGAGAGAGATCTTCTGATCATGCCAGCGGAATTTGCCAAACCATATCTACACAAGGAAGGAACTGCTACACTTTTTGTTGAACATGGCAGAACTTGGAAGGTTCAGACAAAGGTTAATTCCCATGAACAATTTGTATTTTCCAGTGGGTGGAGGAAATTTTTGTTGGACAATAAATTGAAACTTGGCGATGTTTGTGCCTTTGAGATGTTAGTCAGTGAACCATTTTTATTCAAGGTTACTATATATCCTCTAGAAGACAACTCAAACACTCCCCTCTTCAAAGGTATACATTATTACTATTAA 942 0.3609 MSSQYHGVHFFKVIVESTLQRGIMKIPTSFVRRHWEGMSNPVILSLPNGSKSKVFWQNKDGGVWFCNGWKEFAKYSKLDVSHFIVFRYEGNSCFNVIIFGKSALEIEYPLSRDATNEEVEEIDEGSDFSLKFSEERSKRPREEAQEEEEESPNKHKKRACSDYSKHKNTGSSRASEHCKGDFKKKLRMFHKKVKEMFKSNHKHFTCIIRKTYTERDLLIMPAEFAKPYLHKEGTATLFVEHGRTWKVQTKVNSHEQFVFSSGWRKFLLDNKLKLGDVCAFEMLVSEPFLFKVTIYPLEDNSNTPLFKGIHYYY* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0078 313 ProSiteProfiles B3 DNA-binding domain profile. 203 298 IPR003340 GO:0003677
Pvu3g0078 313 SMART B3_2 204 298 IPR003340 GO:0003677
Pvu3g0078 313 SMART B3_2 10 102 IPR003340 GO:0003677
Pvu3g0078 313 Gene3D - 3 103 IPR015300 -
Pvu3g0078 313 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 295 - -
Pvu3g0078 313 MobiDBLite consensus disorder prediction 133 158 - -
Pvu3g0078 313 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Pvu3g0078 313 Gene3D - 183 299 IPR015300 -
Pvu3g0078 313 PANTHER B3 DOMAIN-CONTAINING 5 295 - -
Pvu3g0078 313 MobiDBLite consensus disorder prediction 133 176 - -
Pvu3g0078 313 CDD B3_DNA 207 296 IPR003340 GO:0003677
Pvu3g0078 313 Pfam B3 DNA binding domain 207 293 IPR003340 GO:0003677
Pvu3g0078 313 Pfam B3 DNA binding domain 10 99 IPR003340 GO:0003677
Pvu3g0078 313 SUPERFAMILY DNA-binding pseudobarrel domain 197 295 IPR015300 -
Pvu3g0078 313 CDD B3_DNA 9 99 IPR003340 GO:0003677
Pvu3g0078 313 SUPERFAMILY DNA-binding pseudobarrel domain 5 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0078 Pvu-Chr3 714208 716395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0078 10 299 B3 DNA Binding Superfamily AT3G18990 24.776 8.27e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu3g0078 B3 2.5e-15 CL0405