Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0077 ATGTCTTCTCAATGTCACGGAGTGCATTTTCTCAAGGTTTTTGCAGAACACAACCTTCAACGAGGAATAATGAAAGTTCCAACCAGTTTTGTGAGTAGACATTGGGAAGGAATGTCAAATCCTGTGATTCTAAGTCTTCCAAATGGCAGCAAGAACAAAGTTTTTTGGGTGAATAAGGATGGTGATGTTTGGTTTTGCAATGGTTGGAAAGAGTTTGCAAAATACTCCAAGTTGGATGTGTCACATTTGTTAGTGTTTGAAGGAAATTCTTGCTTTAACGTGATTATTTTTGGAAAAAGTGATTTAGAAATCGAATACCCTTTAAGCAGGGATGCTACTGATGAAAAAGTGGAAGAAATTGATGAAGGTTCTGATTTTTCTCTAAAAAATAGTGAAGAACGAAGTAAGAGGCCAAGAGAAGAAGCACAAGAAGAAATACCTAATAAGCATATAAAGATAGAATGTTCTGATTATTCCAATCACAACAACACTGGAGATTTCAAGAAGAAACTCATAATGTTTCACGAGAAGGTGAAGGAAACGTTCAAGTCTAACCATGAGCATTTCACATGTATTATCCGAAAAACATACATTGAGAGAGATCTTCTGATCATGCCAGAGGAATTTGGTATATTATATCGACACAAGGAAGGAAATGCTGCTACACTTTTTGTTGAACATGGCAGAACTTGGGAGGTTCAGACAAAGGTTAATTCCTATGGACAATTTGTATTTTCCAGTGGGTGGAGGAAATTTTTGTGGGACAATAAATTGAAACTTGGTGATGTTTGTGCTTTTCATGAGATGTTAGACAGTGAACCATTTTTATTCAAGGTTACTATATATCCTCTAGAAGACAACTCAAGCACTTCCCTCTTCAAAGTTTTTCTATTTAACATTTTTAATGTACACTTTCAGGTCAAAAAGGAGTTTCTGATATGCCTTCTTCATCCCCTAATTCATCCCCTAAAGCAAGGACACCAAAGCCTAGAGATGATATCTTTATCTTCATCAAGTCAGAAGTGCCGGTATGACAAACTATAA 1044 0.3611 MSSQCHGVHFLKVFAEHNLQRGIMKVPTSFVSRHWEGMSNPVILSLPNGSKNKVFWVNKDGDVWFCNGWKEFAKYSKLDVSHLLVFEGNSCFNVIIFGKSDLEIEYPLSRDATDEKVEEIDEGSDFSLKNSEERSKRPREEAQEEIPNKHIKIECSDYSNHNNTGDFKKKLIMFHEKVKETFKSNHEHFTCIIRKTYIERDLLIMPEEFGILYRHKEGNAATLFVEHGRTWEVQTKVNSYGQFVFSSGWRKFLWDNKLKLGDVCAFHEMLDSEPFLFKVTIYPLEDNSSTSLFKVFLFNIFNVHFQVKKEFLICLLHPLIHPLKQGHQSLEMISLSSSSQKCRYDKL* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0077 347 SUPERFAMILY DNA-binding pseudobarrel domain 7 100 IPR015300 -
Pvu3g0077 347 CDD B3_DNA 203 283 IPR003340 GO:0003677
Pvu3g0077 347 SUPERFAMILY DNA-binding pseudobarrel domain 182 282 IPR015300 -
Pvu3g0077 347 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 4 282 - -
Pvu3g0077 347 PANTHER B3 DOMAIN-CONTAINING 4 282 - -
Pvu3g0077 347 CDD B3_DNA 9 97 IPR003340 GO:0003677
Pvu3g0077 347 Gene3D - 173 286 IPR015300 -
Pvu3g0077 347 Gene3D - 3 101 IPR015300 -
Pvu3g0077 347 ProSiteProfiles B3 DNA-binding domain profile. 188 285 IPR003340 GO:0003677
Pvu3g0077 347 MobiDBLite consensus disorder prediction 116 146 - -
Pvu3g0077 347 ProSiteProfiles B3 DNA-binding domain profile. 9 100 IPR003340 GO:0003677
Pvu3g0077 347 SMART B3_2 10 100 IPR003340 GO:0003677
Pvu3g0077 347 SMART B3_2 189 285 IPR003340 GO:0003677
Pvu3g0077 347 Pfam B3 DNA binding domain 10 97 IPR003340 GO:0003677
Pvu3g0077 347 Pfam B3 DNA binding domain 192 279 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0077 Pvu-Chr3 698323 701336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0077 10 286 B3 DNA Binding Superfamily AT3G18990 24.556 4.24e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu3g0077 B3 3.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0077 - - pvu:PHAVU_003G007400g 707.983