Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0054 ATGATAAAAGCACTGATTATCCTTTTGAATGCACAGGCTGCTGGTCAACTCAATTATGTAGCAGGGTCCTTTGTGTGGGTTGAGGACCCTGAATTAGCTTGGATAGATGGAGAAATCCAGGATTCTAAGAAAGATGAGGTCACCATTATCTTTAAATCGGGCACCAGGGTTGTGAGCAAATCGACTAACATGTATCCCAAAGATCCAGAATTCCCACCTAATGGTGTGGAAGATATGACAAAACTGGCATATCTGCATGAACCAGGAGTTCTTCAGAATTTGAAAATTCGATATTCCGGAAATAAAATTTATACATACACTGGAAATATATTGATAGCTGTGAACCCTTTTCAAAGGTTACCTCATTTGACTGAAACTAGTACCATGATGAAGTATAAAGGTGCAGCTTTTGGTGAACAGAGTCCACATCCTTTTGCAATTGCAAGTTCTGCATATAGCAAGATGATAAACGAAAAAAGAAGCCAATCTATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACTGAAAGTACAAAGATGCTCATGCAGTATCTAGCTTTTTTAGGAGGAAGAGCAGAAACTGAAGGACGGTCTGTGGAGCAACAAGTTCTCGAGTATAATTTCAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACATATTTGCTGGAAAGATCCCGTGTCTGTCAAGTTTCTAATCCTGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCACAAGAGGATGTTGGTAAGTACAAACTGGAAGATCCAAGAAAATTTCATTACCTTAATCAATCAAGCTGCATTGAGCTTGATGGGGTGGATGATTCTAAGGAGTACCTTGCAACTAAGAGAGCTATGGAGGTTGTTGGGATCAGCTCTGAGGAGCAGGATGCTATATTTCGAACAGTAGCTGCAATACTTCATTTAGGAAATGTTGATCTTGTTAATGGAGTGGAAGAGGTGTTGGATTCCTCTCAGCCCAAGGATGAAAAATCTTATTTCCACCTAAAAACCGCAGCTGAGCTTTTGATGTGTGATGAGAAATCCCTTGAAGACTCTTTCTGCAAACGTATCATGGTGACTCGTGGTGATACCATAACAAAATCGCTTGATCCAAATTCTGCAGCTCTCAGCAGAGATGCATTAGCTAAAATAATTTATTCAAGGCTTTTTGACTGGATTATGTGCAAGATAAACGACACTATTGGGCAAGATCCAAAGTCAAATAGTTTGATTGGAGTTCTAGATATATATGGATTTGAGAGTTTCAAGACCAACAGCTTTGAGCAATTTTGTATCAATTTAACAAATGAGAAATTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATAAAAAGGAAGAGATTGATTGGAGTTATATTGAGTTCGTTGATAATCAAGATGTTATTGATCTCATAGAGAAGAAACCTGTTGGCATTATTGCTCTCCTGGATGAAGCCTGTATGTTTCCAAGATCAACGCATGAAACATTTGCTGAAAAGATGTATCAAACCTTCATAGGCAAGAAACGCTTCAACAAGCCAAAGTTGTCTCGCACTGACTTCACCATTAAGCACTATGCCGGTGATGTCACTTATCAAACTAATCTTTTCCTTGATAAAAATAAAGACTATGTTATTCCAGAGCATGCTACTCTACTCAGGGCCTCCAAGTGCTCCTTTGTTTCAGGGTTGTTCCCACCTTCACCTCAGGATGCTACAAAATCGAAAAAGTTCTCTTCTATAGCCACTCAGTTTAAGCTACAACTGCAATCATTGCTTGAAACTCTAAATGCTACCGAGCCACACTACATTCGTTGTGTAAAGCCAAATAATGTTCTGAAGCCACGGATATTCGACAACAATAATGTGTTGCAGCAGCTTCGATGTGGAGGAGTATTGGAGGCAATTCGGATAAGTTGTGCTGGATATCCCACTAGAAAGAAATTTGAAGAATTTGTTCAGAGGTTTAGCATCCTGGAACCTGAGGTTCTGAAATCATGCCGTGATGGGATGACTGCTTGCAAGAGGATTCTAGATAGAGTGGATCTTAAAGATTATCAGATTGGAAAGACAAAAGTGTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCAGAGGCCCTGGGAAGATTTGCAACTGTCATTCAGAGAAAATTCCGCACGTTTCTCTGTCAGAAACAGTACATCTTAATGCAGTTGTCTGCCATAGAACTTCAAAGGGTTGCCAAAGGTGTCATTTATGTGAATCCTTTAGGACTGTTTGAAGTGTTTTACTATGTAATCAATGAAATACTATTACATGTTGATTACATTTTTTTTATAAAAGTTTTCATGTTAGATGTTAGATATTACTATGCAGTTGTTGATTCTACATTTATGCGCTCTAAATTTAATGTAGGAAAACTTGCACGACATCAGTATGAATGCATGAGGAGAAAAGCAGCTTGTTTGAAAATTCAGAAAGATTTCCTAATGCATATTTCCAGAAATGCTTACAAAACCATTTATGCATCAGCTATTTATATTCAAATTGGTCTGAGAGGGATGGTTGCTAGAAAAGAACTTAGATTCAGAAAACGATCACTAGCTGCAATTGTTATTCAGGTTCTATATAGAGGTTATAAAGATCGTACTTATTTCCAGAGGCTAAAGAAAGCAACAACATTTGCAGTGTGTTCCAGGAAGAGAGCATTGGCTAGGAGAGAACTTCGAAAGCTTAAAATGGAAGCTAAGACACAAGAAAATGAAACACTGCAACAAGCTTTGCAAGAGAAGGAGGTTCGGTTACAAGAAATTGTGGAAGCCAAGACACAAGAAACTGAAAAACTAAAACATGCTTTGCAAGAGATGCAACATCAGTTCCAAGAAATTAAGGAAGCCAAGACACATGAAACTGAAAAACTACAGCATGATTTGCAAGAGATGAAGCTTCAGTTCCAAGAAACTAAGGCAGTGCTCATTCAGGAACAAGCTGCCAAGAAAGTAGTTGAGCAACCTCCAACTATGCAGGAACTGGTGAATTCACTGGAAAAGAAAATTGTGCAGGAGTTACCTACTAATGTTACCAACTATGAGTTGATCAATAAACTTACTTCAGAAAATAAACATATTAAGGAACGGATTAAACTATTGGAAAAGAAAACTTCTTTACAAAAGTTATCTGCTAATGTTACTAACAATGAGTTTATCCATAAGCTTACTTCAGAAAATGAACATCTTAAGGAACAAATTAGTTCATTGGAAAAAAGTATGCAGGATGAGTTTCCTATTAATGCTACTCACAATGAGTTGATCAATAAATTTCACTCAGAAAATGAACATATTAAGTCATCGTACTCGCAACTTTCTCCCTCACAAGTTTGCTCTCTCGAGATATCTCTTCGTCGTCATTATCACTCACGTACTTCTCCATCTTCTTCCTCGCACTTGTGGTCTCTAATTAGCAACGACCTTTACCATCGTGACATTGTTCCCACCACACCATCTTTGCAAGCTTCTCGCCATCACACCTCTACTGCAAATTTTTCGTCGTCATTACGCTTG 3618 0.3831 MIKALIILLNAQAAGQLNYVAGSFVWVEDPELAWIDGEIQDSKKDEVTIIFKSGTRVVSKSTNMYPKDPEFPPNGVEDMTKLAYLHEPGVLQNLKIRYSGNKIYTYTGNILIAVNPFQRLPHLTETSTMMKYKGAAFGEQSPHPFAIASSAYSKMINEKRSQSILVSGESGAGKTESTKMLMQYLAFLGGRAETEGRSVEQQVLEYNFSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSNPERNYHCFYMLCAAPQEDVGKYKLEDPRKFHYLNQSSCIELDGVDDSKEYLATKRAMEVVGISSEEQDAIFRTVAAILHLGNVDLVNGVEEVLDSSQPKDEKSYFHLKTAAELLMCDEKSLEDSFCKRIMVTRGDTITKSLDPNSAALSRDALAKIIYSRLFDWIMCKINDTIGQDPKSNSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDVIDLIEKKPVGIIALLDEACMFPRSTHETFAEKMYQTFIGKKRFNKPKLSRTDFTIKHYAGDVTYQTNLFLDKNKDYVIPEHATLLRASKCSFVSGLFPPSPQDATKSKKFSSIATQFKLQLQSLLETLNATEPHYIRCVKPNNVLKPRIFDNNNVLQQLRCGGVLEAIRISCAGYPTRKKFEEFVQRFSILEPEVLKSCRDGMTACKRILDRVDLKDYQIGKTKVFLRAGQMAELDACRAEALGRFATVIQRKFRTFLCQKQYILMQLSAIELQRVAKGVIYVNPLGLFEVFYYVINEILLHVDYIFFIKVFMLDVRYYYAVVDSTFMRSKFNVGKLARHQYECMRRKAACLKIQKDFLMHISRNAYKTIYASAIYIQIGLRGMVARKELRFRKRSLAAIVIQVLYRGYKDRTYFQRLKKATTFAVCSRKRALARRELRKLKMEAKTQENETLQQALQEKEVRLQEIVEAKTQETEKLKHALQEMQHQFQEIKEAKTHETEKLQHDLQEMKLQFQETKAVLIQEQAAKKVVEQPPTMQELVNSLEKKIVQELPTNVTNYELINKLTSENKHIKERIKLLEKKTSLQKLSANVTNNEFIHKLTSENEHLKEQISSLEKSMQDEFPINATHNELINKFHSENEHIKSSYSQLSPSQVCSLEISLRRHYHSRTSPSSSSHLWSLISNDLYHRDIVPTTPSLQASRHHTSTANFSSSLRL 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0054 1206 PRINTS Myosin heavy chain signature 104 123 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 PRINTS Myosin heavy chain signature 161 186 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 PRINTS Myosin heavy chain signature 427 455 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 PRINTS Myosin heavy chain signature 480 508 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 SMART MYSc_2a 68 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 MobiDBLite consensus disorder prediction 1187 1206 - -
Pvu3g0054 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 773 IPR027417 -
Pvu3g0054 1206 Gene3D Myosin VI head, motor domain, U50 subdomain 308 599 - -
Pvu3g0054 1206 PANTHER MYOSIN HEAVY CHAIN 820 974 - -
Pvu3g0054 1206 PANTHER MYOSIN HEAVY CHAIN 17 771 - -
Pvu3g0054 1206 Gene3D - 664 774 - -
Pvu3g0054 1206 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 20 69 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 Pfam Myosin head (motor domain) 76 718 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 PANTHER MYOSIN 820 974 - -
Pvu3g0054 1206 PANTHER MYOSIN 17 771 - -
Pvu3g0054 1206 ProSiteProfiles IQ motif profile. 862 889 IPR000048 GO:0005515
Pvu3g0054 1206 Coils Coil 921 1003 - -
Pvu3g0054 1206 Pfam Myosin N-terminal SH3-like domain 22 60 IPR004009 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 ProSiteProfiles Myosin motor domain profile. 74 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Pvu3g0054 1206 Coils Coil 1088 1108 - -
Pvu3g0054 1206 SMART iq_5 884 906 IPR000048 GO:0005515
Pvu3g0054 1206 SMART iq_5 859 881 IPR000048 GO:0005515
Pvu3g0054 1206 SMART iq_5 732 754 IPR000048 GO:0005515
Pvu3g0054 1206 SMART iq_5 836 858 IPR000048 GO:0005515
Pvu3g0054 1206 Gene3D - 860 904 - -
Pvu3g0054 1206 Pfam IQ calmodulin-binding motif 735 753 IPR000048 GO:0005515
Pvu3g0054 1206 ProSiteProfiles IQ motif profile. 837 863 IPR000048 GO:0005515
Pvu3g0054 1206 CDD MYSc_Myo11 88 718 IPR036018 -
Pvu3g0054 1206 Gene3D - 248 306 - -
Pvu3g0054 1206 Gene3D - 437 621 - -
Pvu3g0054 1206 ProSiteProfiles IQ motif profile. 885 913 IPR000048 GO:0005515
Pvu3g0054 1206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 836 937 IPR027417 -
Pvu3g0054 1206 Gene3D Kinesin motor domain 77 660 IPR036961 -
Pvu3g0054 1206 Coils Coil 1052 1072 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0054 Pvu-Chr3 454103 466766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0054 14 1135 Myosins gene family AT1G04600 56.720 0.0 1282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0054 K10357 - gmx:100791031 1389.02