Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0049 ATGACTCCTCGCGTCGACGATTTCGACAATCTCTCCTCCACCGATGATGATGATGACGACGACGGCTTCAAGGAGGATATGGCAGCGCTATCCCGAGCCTGCAGGATTGTTGTCCCAGGCGCCGACGATTATTCCGCCGCCGAAGACGGTGTTCCGTCGGAGGACCCGAACATTGACGCTAGCACCGCCATTGTTTCGGTTGCCACCGACTCGGACTCTGACGACCAGGACGACCTGGAATGTCTCAAAAGAGTGCAGAGCCTCTACCAGCCTCTGTCCGTTCTTCCGCCGCTTGCGCCGGCGGCCTTGTCTGAGGATGACGATGACGTGGATGACCTCGAGACGGTGCGCGCCATCATGAAAAGGTTTGGCGACTACAACGAAGGTTTGCGTGAAGGTGGAAGGAAAGTGTTGGTTGAGGGGGATCATGCCTCCAGCATGGACTGTGAGGGTGACATTGCTAATGGCTCAATCCATAACGAATCAGGTGGTAGTGAATTATGTCCTGTTTCTCAAGACCCTAATGAGGCTGCCACAGAGGAGTTGATTGAAAACATAGAAAAGCAGCTTAGTGATTTTGTTGAGAGTTCTGAACCCGATGCCTGGGAGTCATCCAGATTACCTCAGAAAAGATTGAGCTGTCCTCCTGTTGTTCAGTGTTTTATTGATGCCATTAAGAAAAATAGGGATTTGCAGAGATTTCTTAGAGGTAAGTTGATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAGAATTAAAATTCTTAAGGACTTCCAGGCTTCATGCTCTAGAAGAACAGGGAATGTGTTATCACTGAAAAAAGATCCACGTGTTCAATTAATCTCTGCAAAAAAGTCTTCCGCTCCAAAGAAATCTAAGAAACGAAAAAAGGTACCTGCAATGTGTTATGGCCCAGAAGAAAATTCTCATGTTGCTAATTATAGGAGGGTATTGGAAAGATTTCCACTTTCATTGGATCGGAAAAAATGGTCCAAGGTAGAAAGGGAAAATCTTTTGAAGGGAATTAAGCAACAGTTCCAAGAAATGGTGCTCCAACTCTCACTTTCAATTGATAGAACTAGTTCAGAGGGCTTGCTTGGAGAGGCAGATGACATGGATAGTATAATTTCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGAAAATTTTTACCTAAAGTTAATTGGGATCTGTTAGCTTCCATGTATGTTGGTGGCCATACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTATGAAGATCCTTTGATCAACCAAGGTGCATGGACTAAGGAAGAGGACAAGTCCCTTTTACTTATTGTCCAAGATACAGGAATCAGGAACTGGTTCGAAATAGCTGCATCATTGGGCACAAGCAGGACTCCATTTCAATGCTTGTCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGACGGTCAACTCTGTTCTGCCGTGACATATTTTGGTGATGGCAATTGGCAGTACGTGGCTTCTGTTTTAGAACGGCGAACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTTTGTCCTGAGAAGAAAGGGAGCTTTACAGAAGAGGAGGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGCCAAGCATGGATATTGTTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAGTGCCGAAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATTATTGGAAGTAACTTCGTTGATCGAGAATCTGAACGGCCAACCATTACACTTAATGACTTTATTCCTTTACCTGCGTTAGCTTCGAAATCTGATATTGGTGCTTCAAATCTTCCCAAGAAGCGCAAGTCAAGCAATGTTCCCAAGAAAACAAGCTCTAAGAAACGTGCAAAAAGAATTCGACGTTGTACCAAAGAAGTACAAGATACAGAAGTATATAGTGATGATGATTTCTACCCAGTCTCTTCATGCAGCAATCTTCCCAAGAAGAACAGGTCCAAAATACATGCAAAAAGCAGTCGAAATTGTACCCAGGAACTAGTGGATATATCTTGTAGTGACAAGGTCAAGACTTGCATTGAGGGTCCAGAAAACCAGTCTACCTGTATTGTGAATTCTGAAAATCAATATTCAGACAACATAACCCTTTCATGTTTTATACGCAACAAATCAAATGAGATATTATCTAGATTTACCAAAAATTTGAGTCAGACTTCCTTCTCCTCTAGGATTACTGATGTGCCTGAGCAGGTTGAAAGTCAAAACCCATCCGATTATCAAAGCGGCTTGTCTCAGTCATATGATACTGTTGGAAGTCTAAATTTGTTTGTACAGCCGAATAGTGCTTTTGATAGAAACCCAGAGGATACCAATACTTTGACTAATGACGATGACGATGATATGACCCTTGCATCCTTTATAAAGAAAGAGTGTCAACCTGCTAAAGGACCCGACGTATGCTCTTCCAAATTGAAAACCGGATCTGTATTACTAAATGAAGAACATTGTGCAAGCAAGCCAACCATCATATCTGATAACAGTGAACTGTCAATGTCAAAGCATGTTGAAGAGATGGAGACTGTTTTACGTGGTTGTGTTGCTAAACCAATGGATACCATCGTGGAAGAAAAGGATGATGAGCTTTCTACTTCCCCCGTGCAAAACAGGCCAAGGAGGGAGCGAAAACGTCCCAGTAGATTTTTGTAG 2931 0.4295 MTPRVDDFDNLSSTDDDDDDDGFKEDMAALSRACRIVVPGADDYSAAEDGVPSEDPNIDASTAIVSVATDSDSDDQDDLECLKRVQSLYQPLSVLPPLAPAALSEDDDDVDDLETVRAIMKRFGDYNEGLREGGRKVLVEGDHASSMDCEGDIANGSIHNESGGSELCPVSQDPNEAATEELIENIEKQLSDFVESSEPDAWESSRLPQKRLSCPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEENKKIRNRIKILKDFQASCSRRTGNVLSLKKDPRVQLISAKKSSAPKKSKKRKKVPAMCYGPEENSHVANYRRVLERFPLSLDRKKWSKVERENLLKGIKQQFQEMVLQLSLSIDRTSSEGLLGEADDMDSIISSVKDLEVTPERIRKFLPKVNWDLLASMYVGGHTGAECESRWLNYEDPLINQGAWTKEEDKSLLLIVQDTGIRNWFEIAASLGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDGQLCSAVTYFGDGNWQYVASVLERRTGTQCSNRWKKSLCPEKKGSFTEEEDIRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESERPTITLNDFIPLPALASKSDIGASNLPKKRKSSNVPKKTSSKKRAKRIRRCTKEVQDTEVYSDDDFYPVSSCSNLPKKNRSKIHAKSSRNCTQELVDISCSDKVKTCIEGPENQSTCIVNSENQYSDNITLSCFIRNKSNEILSRFTKNLSQTSFSSRITDVPEQVESQNPSDYQSGLSQSYDTVGSLNLFVQPNSAFDRNPEDTNTLTNDDDDDMTLASFIKKECQPAKGPDVCSSKLKTGSVLLNEEHCASKPTIISDNSELSMSKHVEEMETVLRGCVAKPMDTIVEEKDDELSTSPVQNRPRRERKRPSRFL* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0049 976 MobiDBLite consensus disorder prediction 948 966 - -
Pvu3g0049 976 CDD SANT 434 479 IPR001005 -
Pvu3g0049 976 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 536 581 IPR017930 -
Pvu3g0049 976 Gene3D - 589 635 - -
Pvu3g0049 976 ProSiteProfiles Myb-like domain profile. 582 632 IPR001005 -
Pvu3g0049 976 ProSiteProfiles Myb-like domain profile. 535 581 IPR001005 -
Pvu3g0049 976 Pfam Myb-like DNA-binding domain 435 496 - -
Pvu3g0049 976 SUPERFAMILY Homeodomain-like 561 633 IPR009057 -
Pvu3g0049 976 ProSiteProfiles Myb-like domain profile. 427 479 IPR001005 -
Pvu3g0049 976 SMART sant 330 428 IPR001005 -
Pvu3g0049 976 SMART sant 431 481 IPR001005 -
Pvu3g0049 976 SMART sant 586 634 IPR001005 -
Pvu3g0049 976 SMART sant 535 583 IPR001005 -
Pvu3g0049 976 SMART sant 484 533 IPR001005 -
Pvu3g0049 976 MobiDBLite consensus disorder prediction 681 709 - -
Pvu3g0049 976 Pfam Myb-like DNA-binding domain 589 630 IPR001005 -
Pvu3g0049 976 Pfam Myb-like DNA-binding domain 331 425 IPR001005 -
Pvu3g0049 976 Pfam Myb-like DNA-binding domain 536 579 IPR001005 -
Pvu3g0049 976 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 427 479 IPR017930 -
Pvu3g0049 976 Gene3D - 486 534 - -
Pvu3g0049 976 ProSiteProfiles Myb-like domain profile. 480 531 IPR001005 -
Pvu3g0049 976 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 480 535 IPR017930 -
Pvu3g0049 976 MobiDBLite consensus disorder prediction 948 976 - -
Pvu3g0049 976 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 582 636 IPR017930 -
Pvu3g0049 976 Gene3D - 330 428 - -
Pvu3g0049 976 SUPERFAMILY Homeodomain-like 483 577 IPR009057 -
Pvu3g0049 976 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 15 904 - -
Pvu3g0049 976 SUPERFAMILY Homeodomain-like 408 476 IPR009057 -
Pvu3g0049 976 CDD SANT 487 531 IPR001005 -
Pvu3g0049 976 MobiDBLite consensus disorder prediction 691 709 - -
Pvu3g0049 976 MobiDBLite consensus disorder prediction 1 24 - -
Pvu3g0049 976 Gene3D - 429 479 - -
Pvu3g0049 976 CDD SANT 590 631 IPR001005 -
Pvu3g0049 976 Gene3D - 535 587 - -
Pvu3g0049 976 CDD SANT 538 581 IPR001005 -
Pvu3g0049 976 ProSiteProfiles SANT domain profile. 590 633 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0049 Pvu-Chr3 412647 419669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0049 203 715 MYB-Related Transcription Factor Family AT3G18100 49.620 2.70e-168 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g0049 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0049 K09422 - gmx:778073 1333.55