Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g0041 ATGGGACGTGGAAAGATTGAGATAAAGAGGATCGAGAACACCACCACAAGGCAAGTTACCTTCTCCAAAAGAAGAGGTGGCCTCATCAAGAAGACAAAGGAGCTTTCTGTGCTCTGTGATGCACAGATCGGAATCATCATCTTCTCCAGCACTGGGAAGATGTGGCAATGGTGCACTGAAGCCTTAAGGATGGAGCAGATCATAGAGAGGTATCAGATAACAACAGGAGCTCGCATTGCAGAACGTGATCATCCCCGTGAAGAGTTTATCCATGACATGGCAATGCTGAGGCAAGAAACTCTTCGTCTTGAACTGGGAATTCAAAGGTATCTTGGAGAAGACATGGGGTGTTTGCAATATGAAGATTTGAACAAACTTGAACAAGAATTGGAGAATTCTGTCGCAAAGGTTCGAAATCGTCAGAATGAGCTCTTGCAACAACAAATGGAGAATCTGAGAAGGAAGGAAAGGATCTTGGAAGAGGAAAACAATAATTTGTCCACTTGGGAACAGAGAGCAGTGTTGGAGTTTGAGAAGGCTAGAATGGAAGCAAGCAAAGGAATGAATGTGATGGATGAGTTTTCATTGTTTGAAGACCAACCTGCTGGCAGCATCCTTCAACTTGCTTCCCCTGTGCTTCCTCACTTTCACCCTTATCTTCAACTTGCACAACCCAATATCAACCCTCACCAAGATACCAATATATGTTTCAAAACATGA 720 0.4361 MGRGKIEIKRIENTTTRQVTFSKRRGGLIKKTKELSVLCDAQIGIIIFSSTGKMWQWCTEALRMEQIIERYQITTGARIAERDHPREEFIHDMAMLRQETLRLELGIQRYLGEDMGCLQYEDLNKLEQELENSVAKVRNRQNELLQQQMENLRRKERILEEENNNLSTWEQRAVLEFEKARMEASKGMNVMDEFSLFEDQPAGSILQLASPVLPHFHPYLQLAQPNINPHQDTNICFKT* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g0041 239 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g0041 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Pvu3g0041 239 ProSiteProfiles K-box domain profile. 86 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g0041 239 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Pvu3g0041 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g0041 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g0041 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu3g0041 239 Coils Coil 120 172 - -
Pvu3g0041 239 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pvu3g0041 239 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pvu3g0041 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu3g0041 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g0041 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu3g0041 239 PANTHER PROTEIN TRANSPARENT TESTA 16-LIKE ISOFORM X1 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g0041 Pvu-Chr3 353569 357928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g0041 1 227 MADS-box Gene Family AT5G23260 48.400 8.90e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu3g0041 K-box 2.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g0041 - - gmx:100783876 357.451