Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3432 ATGAAAGCAACCTGCAATTCCAAGAAAGAACGGTGTTTGGCGACTTCGGCTTGGAGTGATGATGTTGGCAGAGTTGGAGGTCACGCCAGCCACAGCAATGCTTTTGTATTTTGGACTATAAAACCATTATTCAGTCTCTGCTTCTCCTTCTCAATTCCTCTCTTCCATTCCGACATCAACATGAACGGGAAAGCCTCCGTCTCTAAGGAGCTCAATGCCAAGCACGCCAAGATCTTGGAAGGACTTCTTAAGCTGCCCGATAACAGGGAATGTGCAGACTGCCGGAACAGGGCACCACGATGGGCTAGTGTTAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGCCTTGGAGTTCATATATCAAAGGTGCGCTCCACAACTTTAGATACGTGGTTGCCAGAGCAAGTTTCTTTCATGCAATTTATGGGTAATGTAAAGTCAAATAAGCACTGGGAGGCAGAAATGCCACCAAATTTTGATAGAAGTAAATTGGCAATGGAGAAGTTTATCCGTATCAAATATGTGGAGAAAATATGGGTTTCAAAAGATGATATGCAATCAACATCAAGTGGAGGGGCTAGGAAGGGTATTCTCAAGAACAGCAGAAGACTTTCTCTTGAAGAAAGCATTCTTGCAAACCACGTCTCAAAAATTGTACCACCAATAACAAGAGCTCGTGGGGTTTTTATAGAGACACAAAAGAAGAATTCTCCTCCATTTAAAAGACCATCCTCATCTGTTGATTTTGACAAGTCCACAAAGAGCATCGGTACTGGGGACATTTTCAACTTGCTTTGCATCTATGACGATAACCAAAATTTCTCAACACTGCCACCTTCAAGCTGGGCAACATTTGATTGA 876 0.4281 MKATCNSKKERCLATSAWSDDVGRVGGHASHSNAFVFWTIKPLFSLCFSFSIPLFHSDINMNGKASVSKELNAKHAKILEGLLKLPDNRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPEQVSFMQFMGNVKSNKHWEAEMPPNFDRSKLAMEKFIRIKYVEKIWVSKDDMQSTSSGGARKGILKNSRRLSLEESILANHVSKIVPPITRARGVFIETQKKNSPPFKRPSSSVDFDKSTKSIGTGDIFNLLCIYDDNQNFSTLPPSSWATFD* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3432 291 PRINTS HIV Rev interacting protein signature 88 107 IPR001164 GO:0005096
Pvu2g3432 291 PRINTS HIV Rev interacting protein signature 107 124 IPR001164 GO:0005096
Pvu2g3432 291 PRINTS HIV Rev interacting protein signature 128 149 IPR001164 GO:0005096
Pvu2g3432 291 Pfam Putative GTPase activating protein for Arf 77 187 IPR001164 GO:0005096
Pvu2g3432 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 61 291 - -
Pvu2g3432 291 SUPERFAMILY ArfGap/RecO-like zinc finger 76 186 IPR037278 -
Pvu2g3432 291 ProSiteProfiles ARF GTPase-activating proteins domain profile. 76 192 IPR001164 GO:0005096
Pvu2g3432 291 Gene3D Arf GTPase activating protein 56 193 IPR038508 -
Pvu2g3432 291 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 61 291 IPR044520 GO:0005096
Pvu2g3432 291 SMART arf_gap_3 76 192 IPR001164 GO:0005096
Pvu2g3432 291 CDD ArfGap 79 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3432 Pvu-Chr2 49011859 49016470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3432 82 200 C2H2 Transcription Factor Family AT4G05330 45.600 3.23e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3432 K12486 - gmx:100803735 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3432 2 49011859 49016470 Pvu4g1494 4 41982920 41986827 PCT
Pvu4g1490 4 41950565 41954663 Pvu2g3432 2 49011859 49016470 PCT