Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu2g3428 ATGGAGTATGGGAGTGGAGGTGCTGGCTCTCCGTCTGCAGGGGAACATGATGCTTCGGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCGTTCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCACCCAGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGTCAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCAGACAACTGTACTCTTCGTGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCTTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTGGACTTGTCGATGTCGTGTTTTGGAAACCAAGCGTTGGTTGATCATGTTCCCGCACATTCTCCTTCCCTTAATCTCGATCTTCTCTCTGCGGGGACTTCCTCATTGCCAAATATGCCTTATCAGCCTCCTTACCTTTCGGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAAAGCCATGGAAGAATTACTCAGGCTGGTGCAGACAAACGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGAGATGTCCTTAATTCTGATGCCTACGAAAGAATTTTCCCCAAGCCCAATAGTCGCCCCAAGAATCCTAATGTTCGCCTTGAAGCATCACGAGATTCTGCAGTCGTATTAATCAATAGTTTGGCTTTGGCTGATATGTTTATGGACCCAAACAAGTGGACGGAACTTTTTCCCACTATTGTCTCGGTGGCAACGACTATTCAAGTCATATCTTCTGGGATGGGTGGTTCTTTGCATCTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGCACGTGGGCAGTGGTGGACGTTTCTTATGATTTTCCCCAAGACACTCACTTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGCCAGTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGACAAAACTCTGCCTCATCGGCTTTTCAGAAATCTTATTTATAGTGGGATGGCATTTAGCGCTGAAAGATGGCTTGCAACCCTCCAGAGAATGTGTGAAAGACTTACGTATCTCATGGTTACACCCAATTCAACCAGGGATAATCCTGGAGGAGTAATTTCATCTGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCAGCAATTTTTGTGCCAGTATTGGTACTTCAAGTGGCCGCCGATGGACCACAATCTCCGGATTTAATGAAATTTTAATCAGAGTCACTGTCCACAAAAGCTCAAATCCTGGACAACCTAATAGCGTGGTGCTAAGTGCAGCCACTACCATTTGGCTGCCCACCCCTCCACACACCGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTGCAAGAGGTTGCCCAGATAGCAAATGGTCCACATCCTGGTAATAGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAGAACATGTTAATACTCCAAGAGAGCTGCATTGATTCATCTGGTTCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCGATGAACATAGCAATGAGTGGTGAAGACACTTCATGCATTCCCTTGCTACCAAATGGGTTTACGATTTTGCCAGATGGGCAGGCGGAGCAGGAAGGAGATGGAGCATCAACGAGTTCAAACGGAAACAGGAACAAAGGAAGGTCTGGGGGTTCACTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAGGTGACAACTGTTAGTAATCTCATTGCATCCACTGTCAACCAAATAAAGGCTTCATTCACTTGTCCTACCTAG 2130 0.4685 MEYGSGGAGSPSAGEHDASDSQEKRKRYHRHTSVQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQALVDHVPAHSPSLNLDLLSAGTSSLPNMPYQPPYLSDMDKSLMSDIASKAMEELLRLVQTNEPLWLKSNVDGRDVLNSDAYERIFPKPNSRPKNPNVRLEASRDSAVVLINSLALADMFMDPNKWTELFPTIVSVATTIQVISSGMGGSLHLMYAELQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDTHFRSHRRPSGCLIQDMPDGQSKITWVEHVEIEDKTLPHRLFRNLIYSGMAFSAERWLATLQRMCERLTYLMVTPNSTRDNPGGVISSAEGKRSMMKLAQRMVSNFCASIGTSSGRRWTTISGFNEILIRVTVHKSSNPGQPNSVVLSAATTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQIANGPHPGNSISVLRAFNTSQNMLILQESCIDSSGSLVVYCPVDLPSMNIAMSGEDTSCIPLLPNGFTILPDGQAEQEGDGASTSSNGNRNKGRSGGSLVTVAFQILVSSSPSAKLNMEVTTVSNLIASTVNQIKASFTCPT* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu2g3428 709 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Pvu2g3428 709 Gene3D - 12 95 - -
Pvu2g3428 709 ProSiteProfiles START domain profile. 219 448 IPR002913 GO:0008289
Pvu2g3428 709 MobiDBLite consensus disorder prediction 638 661 - -
Pvu2g3428 709 SUPERFAMILY Homeodomain-like 8 82 IPR009057 -
Pvu2g3428 709 CDD homeodomain 24 83 IPR001356 GO:0003677
Pvu2g3428 709 Pfam START domain 229 445 IPR002913 GO:0008289
Pvu2g3428 709 CDD START_ArGLABRA2_like 223 444 - -
Pvu2g3428 709 SUPERFAMILY Bet v1-like 220 446 - -
Pvu2g3428 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 706 IPR042160 -
Pvu2g3428 709 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pvu2g3428 709 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 4 706 - -
Pvu2g3428 709 Gene3D - 227 445 IPR023393 -
Pvu2g3428 709 MobiDBLite consensus disorder prediction 645 661 - -
Pvu2g3428 709 SUPERFAMILY Bet v1-like 468 687 - -
Pvu2g3428 709 MobiDBLite consensus disorder prediction 1 32 - -
Pvu2g3428 709 SMART HOX_1 23 86 IPR001356 GO:0003677
Pvu2g3428 709 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Pvu2g3428 709 SMART START_1 228 445 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu2g3428 Pvu-Chr2 48994117 48997825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu2g3428 20 709 Homeobox Transcription Factor Family AT1G73360 62.553 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu2g3428 START 1.1e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu2g3428 K09338 - gmx:100796042 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g3428 2 48994117 48997825 Pvu4g1520 4 42309097 42313970 PCT